View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_high_34 (Length: 279)
Name: NF13425_high_34
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_34 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 1784691 - 1784949
Alignment:
| Q |
5 |
aagaatcaaaagggactgatttgttcatgtttcaatttggacggtctaatctaaacctcttgaaatatttttatatgcatatgaatactctattaacaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1784691 |
aagaatcaaaagggactgatttgttcatgtttcaatttggacggtctaacctaaacctcttgaaatatttttatatgcatatgaatactctattaacaaa |
1784790 |
T |
|
| Q |
105 |
catgaaattaaataacaaatattctattaactctaaaaaacaccatgttggaattcaagtgtgagtgcctaatttcgcattaattataacttagctaaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
1784791 |
catgaaattaaataacaaatattctattaactctaaaaaa-accatgttggaattcaagtgcgagtgcctagtttcgcattaattataacttagttaaat |
1784889 |
T |
|
| Q |
205 |
gaaaaatatataagagacttgacgcatatatctattatcttaagattttgggtgtggaga |
264 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1784890 |
gaaagttatataagagacttgacacatatatctatcatcttaagattttgggtgtggaga |
1784949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University