View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_high_35 (Length: 268)
Name: NF13425_high_35
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 41484398 - 41484647
Alignment:
| Q |
1 |
tggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattggagatagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484398 |
tggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattggagatagaa |
41484497 |
T |
|
| Q |
101 |
cggctgaaaggagctttccaggtaatgaatcacattggagagactgatatagatgagaagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484498 |
cggctaaaaggagctttccaggtaatgaatcacattggagagactgatatagatgagaagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
41484597 |
T |
|
| Q |
201 |
aagaggaattagagggtgtggaagatcttcaacaaacactagtagttcag |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484598 |
aagaggaattagagggtgtggaagatcttcaacaaacactagtagttcag |
41484647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 40751647 - 40751896
Alignment:
| Q |
1 |
tggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattggagatagaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
40751647 |
tggttggatgttgcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggactggatgcaaaacaagcattggaattggagatagaa |
40751746 |
T |
|
| Q |
101 |
cggctgaaaggagctttccaggtaatgaatcacattggagagactgatatagatgagaagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
200 |
Q |
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| T |
40751747 |
cagctgaaaggagctttccaggtaatgaatcacattggagagactgatccagatgagaagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
40751846 |
T |
|
| Q |
201 |
aagaggaattagagggtgtggaagatcttcaacaaacactagtagttcag |
250 |
Q |
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|||||||||| ||| ||||||||||||||||||||||| || |||||| |
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| T |
40751847 |
aagaggaattggagaacgtggaagatcttcaacaaacactggttgttcag |
40751896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 41477392 - 41477640
Alignment:
| Q |
1 |
tggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattggagatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
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| T |
41477392 |
tggttggatgttgcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcattggagttggagatagaa |
41477491 |
T |
|
| Q |
101 |
cggctgaaaggagctttccaggtaatgaatcacattggagagactgatatagatgagaagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| | ||||| |||||||||||||||||| | |
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| T |
41477492 |
cggctgaaaggagctttccaggtaatgaatcacattggagagactgatctagaagagaagaaaaaactggaggaaatcaaaatggagctgcaggaaaaag |
41477591 |
T |
|
| Q |
201 |
aagaggaattagagggtgtggaagatcttcaacaaacactagtagttca |
249 |
Q |
| |
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|||||||||| || || ||||||||||||||||||||||| || ||||| |
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| T |
41477592 |
aagaggaattggaaggcgtggaagatcttcaacaaacactggttgttca |
41477640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 41470510 - 41470752
Alignment:
| Q |
1 |
tggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattggagatagaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||| | |
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| T |
41470510 |
tggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattggaattgga------a |
41470603 |
T |
|
| Q |
101 |
cggctgaaaggagctttccaggtaatgaatcacattggagagactgatatagatgagaagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
200 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||| ||||||||||| |||| |||| |||||||||||| ||||||| |||||||||||| ||||| |
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| T |
41470604 |
cggctgaaaggagctctccaggtaatgagtcacattcgagagactgatctagaagagatgaaaaaattggaggcaatcaaaatggagctgcataaaaaga |
41470703 |
T |
|
| Q |
201 |
aagaggaattagagggtgtggaagatcttcaacaaacactagtagttca |
249 |
Q |
| |
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|||||||||| ||||| ||| | ||| ||||||| |||| || ||||| |
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| T |
41470704 |
aagaggaattggagggcgtgatacatcctcaacaagcactggttgttca |
41470752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 16408319 - 16408071
Alignment:
| Q |
1 |
tggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattggagatagaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| | ||| |
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| T |
16408319 |
tggttgtatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcattggagttggaagttgaa |
16408220 |
T |
|
| Q |
101 |
cggctgaaaggagctttccaggtaatgaatcacattggagagactgatatagatgagaagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
200 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16408219 |
cggctaagaggagctttccaggtaatgaatcacattggagagactgatcgaaatgataagaaaaaattggaagcaatcagaatggagctgcaggaaaagg |
16408120 |
T |
|
| Q |
201 |
aagaggaattagagggtgtggaagatcttcaacaaacactagtagttca |
249 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
16408119 |
aagaggaattggagggtgtggaagatcttcaacaaacacttgttgttca |
16408071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 52481066 - 52481190
Alignment:
| Q |
1 |
tggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattggagatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||||||||||||| || ||| |
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| T |
52481066 |
tggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattggaaattgaa |
52481165 |
T |
|
| Q |
101 |
cggctgaaaggagctttccaggtaa |
125 |
Q |
| |
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| | ||| || ||||||| |||||| |
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| T |
52481166 |
cagttgagagaagctttcgaggtaa |
52481190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 52481190 - 52481238
Alignment:
| Q |
158 |
aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagagg |
206 |
Q |
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||||||||| |||| |||||| |||||||||||||||||| ||||||| |
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| T |
52481190 |
aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagg |
52481238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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