View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_high_36 (Length: 255)
Name: NF13425_high_36
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_36 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 27977000 - 27976746
Alignment:
| Q |
1 |
atgtttagaatgcgaatgtccttcggatttgttgttttcctttattgtccttagttatgcttttaagtcctgtattgagttttgaaacttttgaatctga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27977000 |
atgtttagaatgtgaatgtccttcggatttgttgttttcctttattgtccttagttctacttttaagtcttgtattgagttttgaaacttttgaatctga |
27976901 |
T |
|
| Q |
101 |
tgaactaatgtgctaaatcttagccaaaactcgagattttcctcgaggaggtcgtcaaggtctgaacggaatttcttttctaaatccgaaaggttttgct |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27976900 |
tgaactgatgtgctaaatcttagccaaaactcgagattttcctcgaggaggtcgtcaaggtctgaacggaatttcttttctaaatccgaaaggttttgcc |
27976801 |
T |
|
| Q |
201 |
gcttatcttggtcagccatgagcttctcaagggttctaaggccatgggctgatga |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27976800 |
gcttatcttggtcagccatgagcttctcaagggttctaaggccatgggctgatga |
27976746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 28306709 - 28306649
Alignment:
| Q |
46 |
tgtccttagttatgcttttaagtcctgtattgagttttgaaacttttgaatctgatgaact |
106 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
28306709 |
tgtccttagttctgaatttaagtcctaaattgagttttgaaacttttgaatctgattaact |
28306649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 46039829 - 46039906
Alignment:
| Q |
40 |
ctttattgtccttagttatgcttttaagtcctgtattgagttttgaaacttttgaatctgatgaactaatgtgctaaa |
117 |
Q |
| |
|
||||||| | ||||||| | ||||||||||||||| || | ||| ||||||||||| ||||||||| | |||||||| |
|
|
| T |
46039829 |
ctttatttttcttagttctacttttaagtcctgtaaagattgttggaacttttgaatttgatgaactgaagtgctaaa |
46039906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University