View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_high_43 (Length: 212)
Name: NF13425_high_43
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 29822884 - 29822702
Alignment:
| Q |
14 |
agaatatcacattccaattcctatacctctgttcaacccaccgaaattgagattctactaaaaagataaatgctagagtcacactctctaaaattctctt |
113 |
Q |
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| T |
29822884 |
agaatatcacattccaattcctatacctctgttcaacccaccgaaactgagattctactaaaaagataaatgttagagtcacactctttaaaattctc-t |
29822786 |
T |
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| Q |
114 |
tttaacacactccaatagaaataagcaatgtaatccacttttttatttcctttaccggttacctgtttcactttgtttcaaatt |
197 |
Q |
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| T |
29822785 |
tttaacacactccaatcaaaataagccatgtaatccacttttttatttcctttaccggttacctgtttcactttgtttcaaatt |
29822702 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 7887670 - 7887622
Alignment:
| Q |
113 |
ttttaacacactccaatagaaataagcaatgtaatccacttttttattt |
161 |
Q |
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| T |
7887670 |
ttttaacacactccaatcaaaataagccatgtagtccacttttttattt |
7887622 |
T |
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