View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_high_5 (Length: 736)
Name: NF13425_high_5
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_5 |
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| [»] scaffold1572 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 19 - 722
Target Start/End: Complemental strand, 21319379 - 21318672
Alignment:
| Q |
19 |
atatcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21319379 |
atatcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactggcaactttcaaattactctcccagctgcatgg |
21319280 |
T |
|
| Q |
119 |
actgaagtagcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaccgtaagttat |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21319279 |
actgaagtagcaaaaacagtacacgtcagaaaggtttatatagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaacgtaagttat |
21319180 |
T |
|
| Q |
219 |
aactaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatc |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21319179 |
aactaatagcagaaaaccaagggaggcatttgggttcaagcaccattgggctatgtgattcaagaaatagatgagacaccgtttcttctcctccacaatt |
21319080 |
T |
|
| Q |
319 |
tccaacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21319079 |
tccaacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagat |
21318980 |
T |
|
| Q |
419 |
atctttgacgggatcgatttattccaagctcttgaccaagacggattacatg----tggcactcccaacattaaagccttgtaagcttccctggcgggat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21318979 |
atctttgacgggatcgatttattccaagctcttgaccaagacggattacatgtgtttggcactcccaacattaaagccttgtaagcttccctggcgggat |
21318880 |
T |
|
| Q |
515 |
agatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctctttaactcttctcaagacctt |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21318879 |
agatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctccttaactcttctcaagacctt |
21318780 |
T |
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| Q |
615 |
ttcctcatcatttaagctccctataacacccacctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaaaacatt |
714 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21318779 |
ttcctcatcatttaagctccctataacacccacctactctcaatttagatataagattgatgacagagtttccctatttcatagctgaatcaaaaacatt |
21318680 |
T |
|
| Q |
715 |
caagattt |
722 |
Q |
| |
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|||||||| |
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| T |
21318679 |
caagattt |
21318672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 149; Significance: 3e-78; HSPs: 3)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 221 - 445
Target Start/End: Original strand, 1044 - 1268
Alignment:
| Q |
221 |
ctaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctc |
320 |
Q |
| |
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|||| ||||||||||||||||| ||| ||||||| ||||||||||||| ||||| | || | |||| ||||||||||||||| ||||||||||||||||| |
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| T |
1044 |
ctaacagcagaaaaccaaggcaagcacttgggtttaagcaccattgggttatgtaactcaaaaaattgatgagacaccgttttttctcctccacaatctc |
1143 |
T |
|
| Q |
321 |
caacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatat |
420 |
Q |
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|||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1144 |
caacacagttaagcatctcttgactaatcactcctctaatatacaaatcatcttttgtagctatcctaatttgaagcattctccataccaacatagatat |
1243 |
T |
|
| Q |
421 |
ctttgacgggatcgatttattccaa |
445 |
Q |
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| T |
1244 |
ctttgacgggatcgatttattccaa |
1268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 539 - 722
Target Start/End: Original strand, 1264 - 1467
Alignment:
| Q |
539 |
tccaaacccatttgtctttctctaaatcattaaattccaccatttctaa-tctctctttaactcttctcaaga-------ccttttcct----catcatt |
626 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
1264 |
tccaaacccatttgcattcctctaaatcattaaattccaccatttctaaatctctctttaactcttctcaagagtcgagaccttttccttcttcatcatt |
1363 |
T |
|
| Q |
627 |
taagctccctat--------aacacccacctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaag |
718 |
Q |
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|||||||||| | ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1364 |
taagctccctgttcaaacttaacacccacctactcgcaatttagacataagattgatgaccaagtttccctatttcatagctgaatcaaaaacattcaag |
1463 |
T |
|
| Q |
719 |
attt |
722 |
Q |
| |
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|||| |
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| T |
1464 |
attt |
1467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 844 - 998
Alignment:
| Q |
34 |
atacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagtagcaaaa |
133 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||| |
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| T |
844 |
atacctccagcaat-atgaagagtcctatccaaaatctcagtagctataactaacaactttcaaattactcccacaactgcacggactgaagtagcaaaa |
942 |
T |
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| Q |
134 |
acagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
192 |
Q |
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|||||| || |||||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
943 |
acagtatacgctagaaagatttatacagaaaagt---ttgcaaaaatatcagaaatcac |
998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 37963959 - 37963803
Alignment:
| Q |
27 |
agaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagt |
126 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||| |
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| T |
37963959 |
agaacaattacctccagcaattata--gagtcctatccaaaatctcagaagctataa-tgacaactttcaaattactcccccaactgcatggactgaagt |
37963863 |
T |
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| Q |
127 |
agcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
192 |
Q |
| |
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||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
37963862 |
agcaaaa----tacacgccag--agatttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
37963803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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