View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_1 (Length: 949)
Name: NF13425_low_1
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 243 - 931
Target Start/End: Original strand, 35978549 - 35979244
Alignment:
| Q |
243 |
ttttttaagacgaactgagcttcaaatcttaaaaaactgattttttatgatagtaaacaaacgcacccttactttaagccttaaggtatcacttgcatct |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978549 |
ttttttaagacgaactgagcttcaaatcttaaaaaactgattttttatgatagtaaacaaacgcacccttactttaagccttaaggtatcacttgcatct |
35978648 |
T |
|
| Q |
343 |
acttctcacccaaatggctcctaaaacaacatcctc-ggctgaatgtctgattgctaaaattttttgtcttttagcctggtaggtcttggcttgaactga |
441 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35978649 |
gcttctcacccaaatggctcctaaaacaacatcctctggctgattgtctgattgctaattttttttgtcttttagcctggtaggtcttggcttgaactga |
35978748 |
T |
|
| Q |
442 |
g----acttagatatataattgaataggaatttagtgaccacacattcaaacaaaaaatgctaaggttttttccccatgagaggctttctggagtaagta |
537 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978749 |
gtgagacttagatatataattgaataggaatttagtgaccacacattcaaacaaaaaatgctaaggttttttccccatgagaggctttctggagtaagta |
35978848 |
T |
|
| Q |
538 |
gtcctgtagagtctgt--ctcagagtgctgtcaaatgtaaatttatgaagcatctctgtaattgaagtgaatctattttacttggcatcatagtgttttg |
635 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978849 |
gtcctgtagagtctgtgtctcagagtgctgtcaaatgtaaatttatgaagcatctctgtaattgaagtgaatctattttacttggcatcatagtgttttg |
35978948 |
T |
|
| Q |
636 |
ccatgtgtcatatttcttacttttcttgcttgctgcataacaggttagtgaagaagtggagcgtgctttggcaaaactaggtcccaccaagcttaatggg |
735 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978949 |
ccatgtgtcatatttcttacttttcttgcttgctgcataacaggttagtgaagaagtggagcgtgctttggcaaaactaggtcccaccaagcttaatggg |
35979048 |
T |
|
| Q |
736 |
aggtataaactatgttcccttagcatgtttagttatacaggggtgtcaaaatgagtcagggtcgataggtttgtcttgctggcttagtcggcaaaaaatt |
835 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35979049 |
aggtataaactttgttcccttagcatgtttagttatacaggggtgtcaaaatgagtcagggtcgataggtttgtcttgctggcttagtcggcaaaaaatt |
35979148 |
T |
|
| Q |
836 |
tgggttggaattaaaagttcaggcctaatcttaattttggcacagcctattccaaattaaaaatgggaaattatccacacctcccaacatcacttt |
931 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35979149 |
tgggttggaattaaaagtccaggcctaatcttaattttggcacagcctattccaaattaaaaatgggaaattatccacacctcccaacattacttt |
35979244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 35978319 - 35978389
Alignment:
| Q |
16 |
tcactggagcctattctacgcagagttgtaagaaaattcacttcattgtggtattaattcctaatatcata |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35978319 |
tcactggagcctattctacgcagagttgtaagaaaattcacttcattgtggtattaattcctaatatcata |
35978389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 707
Target Start/End: Complemental strand, 53507264 - 53507231
Alignment:
| Q |
674 |
aacaggttagtgaagaagtggagcgtgctttggc |
707 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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| T |
53507264 |
aacaggtgagtgaagaagtggagcgtgctttggc |
53507231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 2964161 - 2964105
Alignment:
| Q |
19 |
ctggagcctattctacgcagagttgtaagaaaattcacttcattgtggtattaattc |
75 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| | || ||||||||||| |||| |
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| T |
2964161 |
ctggagcctattctacgaagagttgtaagaaaattaagttgattgtggtattcattc |
2964105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 674 - 741
Target Start/End: Complemental strand, 2963661 - 2963594
Alignment:
| Q |
674 |
aacaggttagtgaagaagtggagcgtgctttggcaaaactaggtcccaccaagcttaatgggaggtat |
741 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||| ||| |||||||| |||| |||||||||| |
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| T |
2963661 |
aacaggttagcgaagaagtggagcgcgctttagcaaaattagcccccaccaatcttagtgggaggtat |
2963594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 39192565 - 39192609
Alignment:
| Q |
259 |
gagcttcaaatcttaaaaaactgattttttatgatagtaaacaaac |
304 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
39192565 |
gagcttcaaatcttaaaaaattga-tttttatgatagtaaacaaac |
39192609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 11088371 - 11088327
Alignment:
| Q |
259 |
gagcttcaaatcttaaaaaactgattttttatgatagtaaacaaa |
303 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||||||||||||| |
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| T |
11088371 |
gagctttaaatcttagaaaaatgattttttatgatagtaaacaaa |
11088327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 34590304 - 34590347
Alignment:
| Q |
259 |
gagcttcaaatcttaaaaaactgattttttatgatagtaaacaaac |
304 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
34590304 |
gagcttcaaatcttaaaaaa-tgatttt-tatgatagtaaacaaac |
34590347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 34790447 - 34790491
Alignment:
| Q |
259 |
gagcttcaaatcttaaaaaactgattttttatgatagtaaacaaac |
304 |
Q |
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|||||||||||||||||||| ||| |||||||| |||||||||||| |
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| T |
34790447 |
gagcttcaaatcttaaaaaaatga-tttttatgttagtaaacaaac |
34790491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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