View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_low_10 (Length: 549)

Name: NF13425_low_10
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_low_10
NF13425_low_10
[»] chr1 (4 HSPs)
chr1 (7-530)||(2003390-2003912)
chr1 (108-180)||(21703694-21703766)
chr1 (112-180)||(41340033-41340101)
chr1 (108-155)||(52967120-52967167)
[»] chr3 (7 HSPs)
chr3 (79-278)||(49498430-49498629)
chr3 (94-180)||(31808294-31808380)
chr3 (95-180)||(8565146-8565231)
chr3 (94-180)||(31934396-31934482)
chr3 (94-180)||(31951054-31951140)
chr3 (109-180)||(31972630-31972701)
chr3 (28-149)||(12371702-12371823)
[»] chr6 (3 HSPs)
chr6 (90-180)||(9958359-9958449)
chr6 (76-167)||(23576658-23576749)
chr6 (112-172)||(20929253-20929313)
[»] chr5 (2 HSPs)
chr5 (76-167)||(19234736-19234827)
chr5 (23-149)||(26682180-26682306)
[»] chr7 (2 HSPs)
chr7 (94-180)||(8119721-8119807)
chr7 (108-180)||(41600566-41600638)
[»] chr8 (3 HSPs)
chr8 (97-180)||(35284166-35284249)
chr8 (94-180)||(27977875-27977961)
chr8 (94-180)||(28035144-28035230)
[»] scaffold0252 (1 HSPs)
scaffold0252 (94-180)||(7051-7137)
[»] chr2 (6 HSPs)
chr2 (94-180)||(11501455-11501541)
chr2 (76-167)||(11819303-11819394)
chr2 (91-254)||(2974492-2974655)
chr2 (79-182)||(23763414-23763517)
chr2 (79-182)||(23792585-23792688)
chr2 (79-170)||(33649990-33650081)
[»] chr4 (3 HSPs)
chr4 (90-138)||(13685170-13685218)
chr4 (112-167)||(4461712-4461767)
chr4 (115-170)||(14263181-14263236)
[»] scaffold0414 (1 HSPs)
scaffold0414 (108-170)||(10176-10238)


Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Original strand, 2003390 - 2003912
Alignment:
Q  7 tcgaagaatatgtgctttaagtcctcatggttagagtcgcaatttacacattgggtgggacactgaatccccttgtcaagcaaacgaacacgggttggaa 106  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2003390 tcgaagaaaatgtgcttgaagtcctcatggttagagtcgcaatttacacattgggtgggacactgaatccccttgtcaagcaaacgaacacggattggaa 2003489  T
Q  107 gacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaaaatcctggtacatgaagatgggataa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  2003490 gacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatcctcgaccaaaatcctggtacatgaagatgagataa 2003589  T
Q  207 atcaactaactctgtaacacatagtctataagcactacgaaccgaatatcgaccagatttttctactttccaagttagcttatcatgttggacctgttca 306  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2003590 atcaactaactccgtaacacatagtctataagcactacgaaccgaatatcgaccagatttttctactttccaagttagcttatcatgttggacctgttca 2003689  T
Q  307 taaagaggggtattcaaaatcttaacagcttgctcttcactaaaaacttgtcgaatattcagttcattccaacatttagaggcataatccatcaaaatgt 406  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  2003690 taaagaggggtattcaaaatcataacagcttgcttttcactaaaaacttgttgaatattcagttcattccaacatttagaggcagaatccatcaaaatgt 2003789  T
Q  407 taatagagacattccgaacaagaggggtgccagcaatggtatcagggatactctccccattgagtaaccaaggttcattaagaataggaatattatggcc 506  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2003790 taatagagacattccgaacaagaggggcgccagcaatggtatcagggatactctccccattgagtaaccaaggttcattaagaataggaatattatggcc 2003889  T
Q  507 ggacccaatactccaccgtgcccc 530  Q
    || |||||||||||||||||||||    
T  2003890 gg-cccaatactccaccgtgcccc 2003912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 21703694 - 21703766
Alignment:
Q  108 acatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||| |||||||||||||| | || | ||||||||||||||||||| ||||| |||||||| || ||||||    
T  21703694 acatcctcgacacatacgccaaattaaactcttaaccttcggtggaactttaaggttccaaataccagaccaa 21703766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 41340101 - 41340033
Alignment:
Q  112 ccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||||||||| ||||||||| ||||||||||||  | || ||||| |||||||||||||| ||||||    
T  41340101 ccccgacacatatgccacactaaattcttaaccttacggggtaccttgagcttccaaatcccggaccaa 41340033  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 52967120 - 52967167
Alignment:
Q  108 acatccccgacacatacgccacactagattcttaaccttcggtggaac 155  Q
    |||||| |||||||||||||| | || |||||||||||||||||||||    
T  52967120 acatcctcgacacatacgccaaattaaattcttaaccttcggtggaac 52967167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 278
Target Start/End: Complemental strand, 49498629 - 49498430
Alignment:
Q  79 ttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgacc 178  Q
    |||||||| | ||||||||| ||||| || || |||||||||||||||||||||| ||| ||||| || || ||||| |||||||||||||| || ||||    
T  49498629 ttgtcaaggagacgaacacgagttggtaggcagccccgacacatacgccacactaaatttttaactttaggaggaactttaagcttccaaattcctgacc 49498530  T
Q  179 aaaatcctggtacatgaagatgggataaatcaactaactctgtaacacatagtctataagcactacgaaccgaatatcgaccagatttttctactttcca 278  Q
    || | |||||   | | ||||| ||  |||||| ||||||  |||||||||| | |||||||||||| || ||||| ||||||  ||||||| |||||||    
T  49498529 aagaacctggacgacggagatgagaagaatcaattaactcattaacacatagccgataagcactacgtacagaataacgaccatttttttctgctttcca 49498430  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 31808380 - 31808294
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    ||||||||||| |||||||| |||||||||||||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  31808380 acacgggttggtagacatccgcgacacatacgccaaattaaattcttaaccttcggtggaactttaaggttccaaataccagaccaa 31808294  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 8565231 - 8565146
Alignment:
Q  95 cacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    ||||||| || |||||||| |||||||||||||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  8565231 cacgggtgggtagacatccacgacacatacgccaaattaaattcttaaccttcggtggaactttaagattccaaataccagaccaa 8565146  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 31934482 - 31934396
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||||| || | |||||| |||||||| ||||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  31934482 acacgggtcggtaaacatcctcgacacatgcgccaaattaaattcttaaccttcggtggaactttaaggttccaaataccagaccaa 31934396  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 31951140 - 31951054
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    ||||||||||| |  ||||| |||||||| ||||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  31951140 acacgggttggtaatcatcctcgacacatgcgccaaattaaattcttaaccttcggtggaactttaaggttccaaataccagaccaa 31951054  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 31972701 - 31972630
Alignment:
Q  109 catccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    ||||| |||||||| ||||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  31972701 catcctcgacacatgcgccaaattaaattcttaaccttcggtggaactttaaggttccaaataccagaccaa 31972630  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 12371702 - 12371823
Alignment:
Q  28 tcctcatggttagagtcgcaatttacacattgggtgggacactgaatccccttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgcc 127  Q
    |||||||| |||||||| ||| ||||||| || |||||||| | ||  || || |||||||| |||||||| ||||  ||||| |||||||||||| |||    
T  12371702 tcctcatgattagagtcacaacttacacactgagtgggacaattaacgcctttatcaagcaaccgaacacgagttgatagacacccccgacacatatgcc 12371801  T
Q  128 acactagattcttaaccttcgg 149  Q
    | |  | ||| |||||||||||    
T  12371802 aaatcaaatttttaaccttcgg 12371823  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 9958449 - 9958359
Alignment:
Q  90 acgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    ||||||||||||||| | |||||| |||||||||||||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  9958449 acgaacacgggttggtaaacatcctcgacacatacgccaaattaaattcttaaccttcggtggaactttaaggttccaaataccagaccaa 9958359  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 23576658 - 23576749
Alignment:
Q  76 cccttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttcca 167  Q
    ||||||||||| | ||||||||  || ||||| || |||| ||||||||||||||||| ||||||||| || || |||||||| ||||||||    
T  23576658 cccttgtcaaggagacgaacacaagtcggaaggcaaccccaacacatacgccacactacattcttaactttagggggaaccttgagcttcca 23576749  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 20929313 - 20929253
Alignment:
Q  112 ccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatcc 172  Q
    |||||||||||| ||||||||| ||||||||||||  | || ||||| |||||||||||||    
T  20929313 ccccgacacatatgccacactaaattcttaaccttacggggtaccttgagcttccaaatcc 20929253  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 19234827 - 19234736
Alignment:
Q  76 cccttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttcca 167  Q
    ||||||||||| | ||||||||| || ||||| |  |||||||||||||||||||||||||||||||| || || |||||||| ||||||||    
T  19234827 cccttgtcaagaagacgaacacgagtcggaaggcggccccgacacatacgccacactagattcttaactttaggaggaaccttgagcttcca 19234736  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 26682306 - 26682180
Alignment:
Q  23 ttaagtcctcatggttagagtcgcaatttacacattgggtgggacactgaatccccttgtcaagcaaacgaacacgggttggaagacatccccgacacat 122  Q
    |||| |||||||| |||||||| ||| || |||| || |||||||| | ||  || || ||||| || |||||||| ||||| ||||| |||||| ||||    
T  26682306 ttaaatcctcatgattagagtcacaactttcacactgagtgggacaattaacgcctttatcaagaaaccgaacacgagttggtagacaaccccgaaacat 26682207  T
Q  123 acgccacactagattcttaaccttcgg 149  Q
    |||||| |  ||||| |||||||||||    
T  26682206 acgccaaataagatttttaaccttcgg 26682180  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 8119721 - 8119807
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    ||||||||||| |||||||| || ||||||||||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  8119721 acacgggttggtagacatccacggcacatacgccaaattaaattcttaaccttcggtggaactttaaggttccaaataccagaccaa 8119807  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 41600638 - 41600566
Alignment:
Q  108 acatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||| |||||||||||||| | || | ||||||||||||||||||| ||||| |||||||| || ||||||    
T  41600638 acatcctcgacacatacgccaaattaaactcttaaccttcggtggaactttaaggttccaaataccagaccaa 41600566  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 35284249 - 35284166
Alignment:
Q  97 cgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||||| ||||||||||| ||||||||||| | || ||||||||||||||||||| | ||||| |||||||| || ||||||    
T  35284249 cgggttggtagacatccccggcacatacgccagattaaattcttaaccttcggtggagctttaaggttccaaatgcctgaccaa 35284166  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 27977961 - 27977875
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||||| || | ||||||| ||||||||| ||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  27977961 acacgggtcggtaaacatcccagacacatacaccaaaataaattcttaaccttcggtggaactttaagattccaaataccagaccaa 27977875  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 28035230 - 28035144
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||||| || | ||||||| ||||||||| ||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  28035230 acacgggtcggtaaacatcccagacacatacaccaaaataaattcttaaccttcggtggaactttaagattccaaataccagaccaa 28035144  T

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Target: scaffold0252 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 7137 - 7051
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||||| || |||||||| |||||||||| ||| | || ||||||||||||||||||||| ||||| |||||||| || ||||||    
T  7137 acacgggtcggtagacatcctcgacacatacaccaaattaaattcttaaccttcggtggaactttaaggttccaaataccagaccaa 7051  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 11501541 - 11501455
Alignment:
Q  94 acacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaa 180  Q
    |||||||| |||||||| || |||||||||||||| | || ||||||||||||||| ||||| ||||| |||||||| || ||||||    
T  11501541 acacgggtcggaagacagcctcgacacatacgccaaattaaattcttaaccttcggaggaactttaagtttccaaataccagaccaa 11501455  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 11819303 - 11819394
Alignment:
Q  76 cccttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttcca 167  Q
    ||||||||||| | | ||||||| || ||||| || ||||||||||||| |||||||| ||||||||| || || |||||||| ||||||||    
T  11819303 cccttgtcaaggagatgaacacgagtcggaaggcaaccccgacacatacaccacactatattcttaactttagggggaaccttgagcttcca 11819394  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 254
Target Start/End: Original strand, 2974492 - 2974655
Alignment:
Q  91 cgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgaccaaaatcctggta 190  Q
    |||||||||||||| | ||| ||||||||||||||||| |  ||||| ||||| ||||| |||   |||||||||||||| || | |||| ||||  ||     
T  2974492 cgaacacgggttggtaaacagccccgacacatacgccaaatcagatttttaactttcgggggagttttaagcttccaaatgccagtccaatatcccagtt 2974591  T
Q  191 catgaagatgggataaatcaactaactctgtaacacatagtctataagcactacgaaccgaata 254  Q
      ||||| ||||| ||||| ||||||||  | ||||| |||   ||||||||||| ||||||||    
T  2974592 tgtgaaggtgggacaaatctactaactcattgacacacagttggtaagcactacgcaccgaata 2974655  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 23763414 - 23763517
Alignment:
Q  79 ttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgacc 178  Q
    |||| ||||| ||||||||| ||  | | ||||||||||||||||||| | ||||  ||||| || ||| |||| |||||||| ||||| ||||||||||    
T  23763414 ttgtaaagcagacgaacacgagtcagtaaacatccccgacacatacgctagactaagttcttgactttcagtggtaccttaagtttccatatccccgacc 23763513  T
Q  179 aaaa 182  Q
    ||||    
T  23763514 aaaa 23763517  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 23792585 - 23792688
Alignment:
Q  79 ttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaatccccgacc 178  Q
    |||| ||||| ||||||||| || |  | ||||||||||||||||||| | ||||  ||||| || ||| |||| |||||||| ||||| ||||||||||    
T  23792585 ttgtaaagcagacgaacacgagtcgataaacatccccgacacatacgctagactaagttcttgactttcagtggtaccttaagtttccatatccccgacc 23792684  T
Q  179 aaaa 182  Q
    ||||    
T  23792685 aaaa 23792688  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 33650081 - 33649990
Alignment:
Q  79 ttgtcaagcaaacgaacacgggttggaagacatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaat 170  Q
    |||||||| | ||||||||| || || || || |||||| | || |||||||||| ||| ||||| || || ||||||||||||||||||||    
T  33650081 ttgtcaaggacacgaacacgagtcggtaggcagccccgatatatgcgccacactaaatttttaactttaggaggaaccttaagcttccaaat 33649990  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 13685218 - 13685170
Alignment:
Q  90 acgaacacgggttggaagacatccccgacacatacgccacactagattc 138  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||||    
T  13685218 acgaacacgagtcggaagacagccccgacacatacgccacactagattc 13685170  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 4461767 - 4461712
Alignment:
Q  112 ccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttcca 167  Q
    |||||||||||||||||| | ||||||||||| ||||| ||||| || ||||||||    
T  4461767 ccccgacacatacgccactcaagattcttaactttcggaggaactttgagcttcca 4461712  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 14263236 - 14263181
Alignment:
Q  115 cgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaat 170  Q
    |||||||||||||| | || |||||||||||||||||| ||||| || ||||||||    
T  14263236 cgacacatacgccataataaattcttaaccttcggtgggaccttgagattccaaat 14263181  T

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Target: scaffold0414 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 10176 - 10238
Alignment:
Q  108 acatccccgacacatacgccacactagattcttaaccttcggtggaaccttaagcttccaaat 170  Q
    |||||| |||||||||||| | | || ||||||||| ||||||||||| ||||| ||||||||    
T  10176 acatcctcgacacatacgcaaaattaaattcttaactttcggtggaactttaaggttccaaat 10238  T

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