View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_18 (Length: 472)
Name: NF13425_low_18
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 4274780 - 4274977
Alignment:
| Q |
2 |
catcaattacaataacaatcataaacattgacaaaattcatgaatattaaatcattgtaagaaagaaagaaaacctcggggtgataacgaattcctcctt |
101 |
Q |
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| T |
4274780 |
catcaatcacaataacaatcataaacattgacaaaattcatgaatattaaatcattgtaagaaagaaagaaaacctcggggtgataacgaattcctcctt |
4274879 |
T |
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| Q |
102 |
tcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatcttttgggatcgtacattcgacctacaatgat |
199 |
Q |
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| T |
4274880 |
tcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatcttttgggatcgtacattcgacctacaatgat |
4274977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 288 - 453
Target Start/End: Original strand, 4275066 - 4275231
Alignment:
| Q |
288 |
cttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggcaacaaga |
387 |
Q |
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| T |
4275066 |
cttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggcaacaaga |
4275165 |
T |
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| Q |
388 |
gcgttcatggctgttgctgaatgaaagtttgactcagtttagtgtatgtaacagtgatgatactca |
453 |
Q |
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| T |
4275166 |
gcattcatggctgttgctgaatgaaagtttgactcagtttagtgtatgtaacagtgatgatactca |
4275231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 38823327 - 38823203
Alignment:
| Q |
71 |
aaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatctt |
170 |
Q |
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| T |
38823327 |
aaaacctcagggtgataacgaattcctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatctt |
38823228 |
T |
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| Q |
171 |
ttgggatcgtacattcgacctacaa |
195 |
Q |
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| || || |||||||| |||||||| |
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| T |
38823227 |
tgggaatagtacattcaacctacaa |
38823203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 41209785 - 41209661
Alignment:
| Q |
71 |
aaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatctt |
170 |
Q |
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| T |
41209785 |
aaaacctcagggtgataacgaattcctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatctt |
41209686 |
T |
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| Q |
171 |
ttgggatcgtacattcgacctacaa |
195 |
Q |
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| || || |||||||| |||||||| |
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| T |
41209685 |
tgggaattgtacattcaacctacaa |
41209661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 380
Target Start/End: Complemental strand, 41209483 - 41209392
Alignment:
| Q |
289 |
ttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggc |
380 |
Q |
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||||||||||| | ||||||||||| || |||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
41209483 |
ttgatttctctaaatggaatgagaagactcttctcaagcttggaatctaaaccaaggatacgagatgcacgttgaaaattacggtttgtggc |
41209392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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