View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_2 (Length: 822)
Name: NF13425_low_2
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 344 - 814
Target Start/End: Original strand, 365736 - 366207
Alignment:
| Q |
344 |
cttagtgagaaccatttgtcaagtgtactttttatgtatcaaggacaaatattcatcacatctctttattatatttaccagcggaaagacggacaattgg |
443 |
Q |
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| T |
365736 |
cttattgagaaccatttgtcaagtgtattttttatgcatcaaggacaaatattcatcacatctctttattatatttaccagcggaaagacggacaattgg |
365835 |
T |
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| Q |
444 |
taaatatttgtcttacgagtggcgatgaa-gtaatgatttgagaaagtgagagtatggaaaatgtctatgagagctgtttgagatttggcgccattgttg |
542 |
Q |
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| T |
365836 |
taaatatttgtcttaccagtggcgacgaaagtaatgatttgagaaagtgagagtatggaaaatgtctatgagagctgtttgagattcggcgtcattgttg |
365935 |
T |
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| Q |
543 |
atgagactgtggacatttgaggttatggttttgaatttgttgacgaaatggaagtcgtcggaagaaattaggaggctaatgagattagggtgtttttgga |
642 |
Q |
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| T |
365936 |
atgagactgtggacatttgaggttatggttttgaatttgttgacgaaatggaaatcgtcagaagaaattaggaggctaatgagattagggtgtttttgga |
366035 |
T |
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| Q |
643 |
agggacgagtggtggatgatgatggttataggaaagagaggttgtaatagaacgatgaaggtgttgtatgtaatgagagacatgtatgtaatataatgag |
742 |
Q |
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| T |
366036 |
agggacgagtggtggatgatgatggttataggaaagagaggttgtaatagaacgatgaaggtgttgtatgtaatgagagacatgcatgtaatgtaatgag |
366135 |
T |
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| Q |
743 |
gttgaggggaagaattggtttgtaagaatgagaagaatttgaagtcttactgaggagtggtgttgatgatgt |
814 |
Q |
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| T |
366136 |
gttgaggggaagaattggtttgtaagaatgagaagaatttgaagtcttactgaggagtggtgttgatgatgt |
366207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 365611 - 365670
Alignment:
| Q |
219 |
atatttatcagtgaaaaatatttatccatatttttgtgtggatggtaaatttttatccaa |
278 |
Q |
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| T |
365611 |
atatttatcagtgataaatatttatccatatttttgtgtggatggtaaatttttatccaa |
365670 |
T |
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