View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_20 (Length: 402)
Name: NF13425_low_20
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 30276843 - 30277210
Alignment:
| Q |
17 |
caataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatgaatgaacaata |
116 |
Q |
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| T |
30276843 |
caataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatgaatgaacaata |
30276942 |
T |
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| Q |
117 |
ctagtccttcactttttataagcccctttgatacttttcacatatggagtattaagaaaagtttgtagtttaattaatgtgtatgtaatgtatgaatatt |
216 |
Q |
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| T |
30276943 |
ctagtccttctctttttataagcccctttgatacttttcacatatggagtattaagaaaagtttgtagtttaattaatgtgtatgtaatgtatgaatatt |
30277042 |
T |
|
| Q |
217 |
actaaattgtcttttttgtgtatagatgtgtcaaattatgactatgtttcaacacaaattagtaccagtatcaatcaatggtatgtttgaaagaaaaata |
316 |
Q |
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| T |
30277043 |
actaaattgtcttttttgtgtatagatgtgtcaaattatgactatctttcaacacaaattagtactagtatcaatcaagggtatgtttgaaagaaaaata |
30277142 |
T |
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| Q |
317 |
gtagtaaatgcaatttgaaatatggtttaaatctagaaacaaattttcatatctaagctcataaacct |
384 |
Q |
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| T |
30277143 |
gtagtaaatgcaatttgaaatatggtttaaatttaacaacacattttcatatctaagctcataaacct |
30277210 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 30511760 - 30511728
Alignment:
| Q |
166 |
tattaagaaaagtttgtagtttaattaatgtgt |
198 |
Q |
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| T |
30511760 |
tattaagaaaagtttgtagtttatttaatgtgt |
30511728 |
T |
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