View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_low_22 (Length: 384)
Name: NF13425_low_22
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_22 |
 | |
|
| [»] scaffold0559 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 28 - 366
Target Start/End: Complemental strand, 40783123 - 40782786
Alignment:
| Q |
28 |
aatatatgagatgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatctaagagtgagca-taaattaaaggaggaaaca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40783123 |
aatatatgagatgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttctatctaagagtgagcaataaattaaaggaggaaaca |
40783024 |
T |
|
| Q |
127 |
tgatgaggttgtgttgtttgtgagcatgcgcacacatacacatgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40783023 |
tgatgaggttgtgttgtttgtgagcatgcgcacacataca--tgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacg |
40782926 |
T |
|
| Q |
227 |
tgaagatggtcgaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaaa |
326 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40782925 |
tgaagatggtcgaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaaa |
40782826 |
T |
|
| Q |
327 |
tgggtccctgaagctccctaacacacttccacgacacatg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40782825 |
tgggtccctgaagctccctaacacacttccacgacacatg |
40782786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 223 - 366
Target Start/End: Complemental strand, 10990 - 10848
Alignment:
| Q |
223 |
cacgtgaagatggtcgaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
322 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10990 |
cacgtgaagatggtcgaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
10891 |
T |
|
| Q |
323 |
taaatgggtccctgaagctccctaacacacttccacgacacatg |
366 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10890 |
taaatgggt-cctgaagctccctaacacacttccacgacacatg |
10848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 48661237 - 48661108
Alignment:
| Q |
41 |
agatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatc-taa--gagtgagcataaattaaaggaggaaacatgatg--aggt |
135 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||||||||| || | | | ||||||||||||||||||||| | |||||| || |
|
|
| T |
48661237 |
agatgtgaaatccttgtttt-gatccaatttaatttaacttagatattttagagcatgagtgagtgagcataaattaaaggatacataatgatgttgtgt |
48661139 |
T |
|
| Q |
136 |
tgtgttgtttgtgagcatgcgcacacataca |
166 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| |
|
|
| T |
48661138 |
tgttttgtttgtgagcatgtgcacacataca |
48661108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University