View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_23 (Length: 382)
Name: NF13425_low_23
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 18638057 - 18638359
Alignment:
| Q |
4 |
aaatgagattgaaatttgaaatatgaaagtggatttgaatttgaatttggatttacctgtgtttgaattgaaaatccatgatttatcgatggaagagatt |
103 |
Q |
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| T |
18638057 |
aaatgaaattgaaatttgaaatatgaaagtggattt------gaatttggatttacctgtgtttgaattgaaaatccatgatttgtcgatggaagagatt |
18638150 |
T |
|
| Q |
104 |
gaggtgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttcttcatcgattcctagtggaaattctttggtttttggattatccattg |
203 |
Q |
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| T |
18638151 |
gaagtgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttcttcatcgattcctagtggaaattctttggtttttggattctccattg |
18638250 |
T |
|
| Q |
204 |
atgaaaattttctgg-tgaagagtatagttgaattaagttaagtataataaaacagtgtaataatagaaaatgagatgagagaattgagaagttacgtga |
302 |
Q |
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||||| ||||||||| ||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18638251 |
atgaagattttctggttgaagagta-agtt-agttaagt--agtataataaaacagtgtaataatagaaaatgagatgagagaattgagaagttacgtga |
18638346 |
T |
|
| Q |
303 |
ggagggaaatggg |
315 |
Q |
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||||| ||||||| |
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| T |
18638347 |
ggaggaaaatggg |
18638359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 40853752 - 40853972
Alignment:
| Q |
19 |
ttgaaatatgaaagtggatttgaatttgaatttggatttacctgtgtttgaattgaaaatccatgatttatcgatggaagagattgaggtgaattgttga |
118 |
Q |
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| T |
40853752 |
ttgaaatttggaagtggatttgaatttggatttggatttaca-gagtttgaattgaaaatccatgatttgtctatggaagagattgaggtgaattgttga |
40853850 |
T |
|
| Q |
119 |
agtaaattggagtgaagtgaatattgttgttctgtttcttcatcgattcctagtggaaattctttggtttttggattatccattgatgaaaattttctgg |
218 |
Q |
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| T |
40853851 |
agtaagttagagtgaagttaaaattgttattcagtttcttcatggattcatagtggaaattctttggttttt-gattgtccattgatgaagattttgtgc |
40853949 |
T |
|
| Q |
219 |
tgaagagtatagttgaattaagt |
241 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
40853950 |
tgaagattatagttgaattaagt |
40853972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 32178865 - 32179041
Alignment:
| Q |
64 |
gtttgaattgaaaatccatgatttatcgatggaagagattgaggtgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttcttcatcg |
163 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| || |||||| ||| |||||||||| | |
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| T |
32178865 |
gtttgaattgaaaatccatgatttgtctatggaagagattgaggtgaattgttgaagtaagttagagtgaagttaaaattgttattcagtttcttcatgg |
32178964 |
T |
|
| Q |
164 |
attcctagtggaaattctttggtttttggattatccattgatgaaaattttctggtgaagagtatagttgaattaagt |
241 |
Q |
| |
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|||| |||||||||||||||||||||| |||| |||||||||||| ||||| || |||||| |||||||||||||||| |
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|
| T |
32178965 |
attcatagtggaaattctttggttttt-gattgtccattgatgaagattttgtgctgaagattatagttgaattaagt |
32179041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 34704295 - 34704203
Alignment:
| Q |
65 |
tttgaattgaaaatccatgatttatcgatggaagagattgaggtgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttct |
157 |
Q |
| |
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||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34704295 |
tttgaattgaaaatccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatattgtagttctgtttct |
34704203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 34704163 - 34704127
Alignment:
| Q |
188 |
tttggattatccattgatgaaaattttctggtgaaga |
224 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |
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|
| T |
34704163 |
tttggattatccattgctgaaaattttctgctgaaga |
34704127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 28548906 - 28548998
Alignment:
| Q |
65 |
tttgaattgaaaatccatgatttatcgatggaagagattgaggtgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttct |
157 |
Q |
| |
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||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28548906 |
tttgaattgaaaatccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttct |
28548998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 41867512 - 41867420
Alignment:
| Q |
65 |
tttgaattgaaaatccatgatttatcgatggaagagattgaggtgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttct |
157 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41867512 |
tttgaattgaaaatccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttct |
41867420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 28549038 - 28549074
Alignment:
| Q |
188 |
tttggattatccattgatgaaaattttctggtgaaga |
224 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |
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| T |
28549038 |
tttggattatccattgctgaaaattttctgctgaaga |
28549074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 41867380 - 41867344
Alignment:
| Q |
188 |
tttggattatccattgatgaaaattttctggtgaaga |
224 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||| |
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| T |
41867380 |
tttggattatccattgctgaaaattttctgctgaaga |
41867344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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