View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_27 (Length: 332)
Name: NF13425_low_27
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 28876218 - 28876520
Alignment:
| Q |
17 |
acactagagtataatgtttcaagtttccaagtttctttgcaagaattctaatgtttcaaatgctccatgttattttaggcattcaaattttcatgtaaca |
116 |
Q |
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| T |
28876218 |
acactagagtataatgtttcaagtttccaagtttctttgcaagaattctaatgtttcaaatgctccatgttattttaggcattcaaattttcatgtaaca |
28876317 |
T |
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| Q |
117 |
caacttttgtctaattcagtgatcacgagggtgattaaaccaaaggaagttattaacattttctttttccttttaacaatttatcttgatttcttctatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28876318 |
caacttttgtctaattcagtgatcacgagggtgattaaaccaaaggaagttattaacattttctttttccttttaacaatttatcttgatttcttctatt |
28876417 |
T |
|
| Q |
217 |
atgctatacttgtttattttcagatcattttatccatacaattgagaaatctacacaaacgataagaactttggtcttccaactatccaatctactattg |
316 |
Q |
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| T |
28876418 |
atgctatacttgtttattttcagatcattttatccatacaattgagaaatctacacaaacgataagaactttggtcttccaactatccaatctactattg |
28876517 |
T |
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| Q |
317 |
atg |
319 |
Q |
| |
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||| |
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| T |
28876518 |
atg |
28876520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 275
Target Start/End: Original strand, 28842624 - 28842851
Alignment:
| Q |
48 |
tttctttgcaagaattctaatgtttcaaatgctccatgttattttaggcattcaaattttcatgtaacacaacttttgtctaattcagtgatcacgaggg |
147 |
Q |
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|||||| || ||||| ||||||||||| |||| ||||||||| || ||||||| | ||||||||| ||||| |||||||| ||||| ||||| || | |
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| T |
28842624 |
tttcttagcgagaatactaatgtttcagatgcgccatgttatgttgggcattcgagttttcatgttgcacaatttttgtctgattcaaggatcatgatgc |
28842723 |
T |
|
| Q |
148 |
tgattaaaccaaaggaagttattaacattttctttttccttttaacaatttatcttgatttcttctattatgctatacttgtttattttcagatcatttt |
247 |
Q |
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||| |||||||||||||| |||||||||||||||||||||| |||| | ||||||| |||||||| |||||| ||||||||||||| | |||||||||| |
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| T |
28842724 |
tgactaaaccaaaggaagccattaacattttctttttcctttcaacagtctatcttgctttcttcttttatgccatacttgtttattatgagatcatttt |
28842823 |
T |
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| Q |
248 |
atccatacaattgagaaatctacacaaa |
275 |
Q |
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| T |
28842824 |
atccatacaattgagggacctacacaaa |
28842851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 282
Target Start/End: Original strand, 28858051 - 28858265
Alignment:
| Q |
70 |
tttcaaatgctccatgttattttaggcattcaaattttcatgtaacacaacttttgtctaattcagtga-tcacgagggtgattaaaccaaaggaagtta |
168 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| || ||| || | |||| |||||||||| || | |
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| T |
28858051 |
tttcagatgctccatgttattttaggcattcaagttttcatgtttcacaacttttgactaattcagggattcatgatgctgatcaaaccaaaggcagcca |
28858150 |
T |
|
| Q |
169 |
ttaacattttc-tttttccttttaacaatttatcttgatttcttctattatgctatacttgtttattttcagatcattttatccatacaattgagaaatc |
267 |
Q |
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||||||||||| ||||| |||| |||| | |||||| ||||| | ||||||| |||||||||||| | |||||||| ||| ||||||||| || || | |
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| T |
28858151 |
ttaacattttctttttttctttcaacagtatatcttactttctagtcttatgctttacttgtttattatgagatcattctattcatacaatttaggaacc |
28858250 |
T |
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| Q |
268 |
tacacaaacgataag |
282 |
Q |
| |
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||| |||| |||||| |
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| T |
28858251 |
tacgcaaaagataag |
28858265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 28905793 - 28905944
Alignment:
| Q |
168 |
attaacattttctttttccttttaacaatttatcttgatttcttctattatgctatacttgtttattttcagatcattttatccatacaattgagaaatc |
267 |
Q |
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||||||||||||||||||||| || ||||||||| | |||||||||||||||||||| |||||||| | |||||||||| ||||||||||| ||| | |
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| T |
28905793 |
attaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattttaaaacc |
28905892 |
T |
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| Q |
268 |
tacacaaacgataagaactttggtcttccaactatccaatctactattgatg |
319 |
Q |
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|||||| | ||| || | ||| || |||||||||| |||||||||||||||| |
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| T |
28905893 |
tacacagatgatgaggagtttagttttccaactattcaatctactattgatg |
28905944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 28942188 - 28942339
Alignment:
| Q |
168 |
attaacattttctttttccttttaacaatttatcttgatttcttctattatgctatacttgtttattttcagatcattttatccatacaattgagaaatc |
267 |
Q |
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||||||||||||||||||||| || ||||||||| | |||||||||||||||||||| |||||||| | |||||||||| ||||||||||| ||| | |
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| T |
28942188 |
attaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattttaaaacc |
28942287 |
T |
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| Q |
268 |
tacacaaacgataagaactttggtcttccaactatccaatctactattgatg |
319 |
Q |
| |
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|||||| | ||| || | ||| || |||||||||| |||||||||||||||| |
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| T |
28942288 |
tacacagatgatgaggagtttagttttccaactattcaatctactattgatg |
28942339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 28903559 - 28903622
Alignment:
| Q |
99 |
tcaaattttcatgtaacacaacttttgtctaattcagtgatcacgagggtgattaaaccaaagg |
162 |
Q |
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|||||||||||||| |||||||||||||||||| || |||||||| | ||||||||||||||| |
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| T |
28903559 |
tcaaattttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg |
28903622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 28939954 - 28940017
Alignment:
| Q |
99 |
tcaaattttcatgtaacacaacttttgtctaattcagtgatcacgagggtgattaaaccaaagg |
162 |
Q |
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|||||||||||||| |||||||||||||||||| || |||||||| | ||||||||||||||| |
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| T |
28939954 |
tcaaattttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg |
28940017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 16660240 - 16660391
Alignment:
| Q |
168 |
attaacattttctttttccttttaacaatttatcttgatttcttctattatgctatacttgtttattttcagatcattttatccatacaattgagaaatc |
267 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| | |||||||||||||||||||| |||||||| | |||||||||| ||||||||||| ||| | |
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| T |
16660240 |
attaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattttaaaacc |
16660339 |
T |
|
| Q |
268 |
tacacaaacgataagaactttggtcttccaactatccaatctactattgatg |
319 |
Q |
| |
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|||||| | ||| || | ||| || |||||||||| |||||||||||||||| |
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| T |
16660340 |
tacacagatgatgaggagtttagttttccaactattcaatctactattgatg |
16660391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 16658006 - 16658069
Alignment:
| Q |
99 |
tcaaattttcatgtaacacaacttttgtctaattcagtgatcacgagggtgattaaaccaaagg |
162 |
Q |
| |
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|||||||||||||| |||||||||||||||||| || |||||||| | ||||||||||||||| |
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| T |
16658006 |
tcaaattttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg |
16658069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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