View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_low_28 (Length: 328)

Name: NF13425_low_28
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_low_28
NF13425_low_28
[»] chr5 (4 HSPs)
chr5 (1-232)||(524582-524813)
chr5 (257-328)||(524834-524905)
chr5 (266-328)||(37029026-37029088)
chr5 (299-327)||(16515533-16515561)
[»] chr3 (7 HSPs)
chr3 (261-328)||(21660502-21660569)
chr3 (257-328)||(4207339-4207410)
chr3 (261-328)||(27303195-27303266)
chr3 (261-328)||(36538171-36538242)
chr3 (291-328)||(25599105-25599142)
chr3 (291-328)||(50677333-50677370)
chr3 (300-328)||(29387782-29387810)
[»] chr6 (5 HSPs)
chr6 (257-328)||(31234919-31234990)
chr6 (261-328)||(1327601-1327668)
chr6 (279-328)||(31244056-31244104)
chr6 (291-328)||(3748587-3748624)
chr6 (292-328)||(22503751-22503787)
[»] chr1 (5 HSPs)
chr1 (265-327)||(32810344-32810406)
chr1 (261-328)||(50371142-50371213)
chr1 (261-327)||(17674339-17674409)
chr1 (291-328)||(44836740-44836777)
chr1 (291-327)||(13120885-13120921)
[»] chr2 (3 HSPs)
chr2 (257-328)||(12072506-12072577)
chr2 (291-328)||(38599410-38599447)
chr2 (291-328)||(18916073-18916110)
[»] scaffold0482 (1 HSPs)
scaffold0482 (265-328)||(1600-1663)
[»] chr8 (4 HSPs)
chr8 (265-328)||(7790250-7790313)
chr8 (265-328)||(7810836-7810899)
chr8 (261-328)||(30915272-30915344)
chr8 (300-328)||(43968098-43968126)
[»] chr7 (3 HSPs)
chr7 (261-328)||(26633371-26633442)
chr7 (291-328)||(4099976-4100013)
chr7 (291-328)||(36438370-36438407)
[»] chr4 (2 HSPs)
chr4 (261-328)||(35653965-35654036)
chr4 (291-328)||(32130809-32130846)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 524582 - 524813
Alignment:
Q  1 ataatcactcccatttgaatttcaacatgatccctcccaaatttgaatctatcgtatcactatatttgcattgtcattaccaatcaatagaacccattga 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  524582 ataatcactcccatttgaatttcaacatgatccgtcccaaatttgaatctatcatatcactgtatttgcattgtcattaccaatcaatagaacccattga 524681  T
Q  101 attactccagcaccataaaagacttcaaaacaaatcaactcttgctccccaatcaaactgagcaagactcttgttggagagtctagaggagcaccgaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  524682 attactccagcaccataaaagacttcaaaacaaatcaactctcgctccccaattaaactgagcaagactcttgttggagagtctagaggagcaccgaaaa 524781  T
Q  201 caaccccaaactaatgatcatgagagaatttg 232  Q
    ||||||||||||||||||||||||||||||||    
T  524782 caaccccaaactaatgatcatgagagaatttg 524813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 524834 - 524905
Alignment:
Q  257 attctgcgaaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  524834 attctgcgaaaaagaaaggataattgtgattctttaaaatagttttttaaattgattgattaagtgattata 524905  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 37029026 - 37029088
Alignment:
Q  266 aaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||||||||| ||||| |||||||||||| | |||| ||||||||||||||||||||||||    
T  37029026 aaaagaaaggattattgtaattctttgaaatagctttttaaattgattgattaagtgattata 37029088  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 16515561 - 16515533
Alignment:
Q  299 tttttcaaattgattgattaagtgattat 327  Q
    |||||||||||||||||||||||||||||    
T  16515561 tttttcaaattgattgattaagtgattat 16515533  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 21660569 - 21660502
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  21660569 tgcgaaaaagaaaggattattgtgattctttgaaataattttttaaattgattgattaagtgattata 21660502  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 4207339 - 4207410
Alignment:
Q  257 attctgcgaaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||| |||||||||||||  |||||||||||||||||   ||| |||||||| ||||||||||||||||    
T  4207339 attctgcaaaaaagaaaggattgttgtgattctttgaaatatctttccaaattgaatgattaagtgattata 4207410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 27303266 - 27303195
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattcttt----gaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||||||||||  ||  ||||||||||||    ||||| | |||||||||||||||||||||||||||||    
T  27303266 tgcgaaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattata 27303195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 36538171 - 36538242
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattcttt----gaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||||||||||  ||  ||||||||||||    ||||| |||||||||||||| ||||||||||||||||    
T  36538171 tgcgaaaaagaaataattgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattata 36538242  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 25599105 - 25599142
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  25599105 tgaaatagtttttcaaattgactgattaagtgattata 25599142  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 50677333 - 50677370
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  50677333 tgaaatagtttttcaaattgactgattaagtgattata 50677370  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 29387782 - 29387810
Alignment:
Q  300 ttttcaaattgattgattaagtgattata 328  Q
    |||||||||||||||||||||||||||||    
T  29387782 ttttcaaattgattgattaagtgattata 29387810  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 31234990 - 31234919
Alignment:
Q  257 attctgcgaaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||||||||| | |  || |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  31234990 attctgcgaaaaatataacattattgtgattctttgaaatagcttttcaaattgattgattaagtgattata 31234919  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 1327668 - 1327601
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||||||| |  || ||||||||| |||||||| |||||  ||||||||||||||||||||||||    
T  1327668 tgcgaaaaagataatattattgtgattatttgaaatagttttctaaattgattgattaagtgattata 1327601  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 31244104 - 31244056
Alignment:
Q  279 attgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  31244104 attgtgattctttgaaatagcttttcaa-ttgattgattaagtgattata 31244056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 3748587 - 3748624
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| | |||||||||||||||||||||||||||||    
T  3748587 tgaaatagcttttcaaattgattgattaagtgattata 3748624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 22503787 - 22503751
Alignment:
Q  292 gaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  22503787 gaaatagtttttcaaattgactgattaagtgattata 22503751  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 32810344 - 32810406
Alignment:
Q  265 aaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattat 327  Q
    ||||||||||||| |||  ||||||||||||| | ||||||||||||||||||||||||||||    
T  32810344 aaaaagaaaggattattaggattctttgaaatagcttttcaaattgattgattaagtgattat 32810406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 50371213 - 50371142
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattcttt----gaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||||||||| |||  ||||||||||||    ||||  |||||||||||||| ||||||||||||||||    
T  50371213 tgcgaaaaagaaatgattgttgtgattctttcaatgaaacagtttttcaaattgactgattaagtgattata 50371142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 17674339 - 17674409
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattcttt----gaaatcgtttttcaaattgattgattaagtgattat 327  Q
    |||||||||||||  ||  ||||||||||||    ||||| |||||||||||||| |||||||||||||||    
T  17674339 tgcgaaaaagaaataattgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 17674409  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 44836740 - 44836777
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  44836740 tgaaatagtttttcaaattgactgattaagtgattata 44836777  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 13120885 - 13120921
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattat 327  Q
    |||||| |||||||||||||| |||||||||||||||    
T  13120885 tgaaatagtttttcaaattgactgattaagtgattat 13120921  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 12072577 - 12072506
Alignment:
Q  257 attctgcgaaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| ||||||||| | ||  |||||||||||||||||   |||| ||||||||||||||||||||||||    
T  12072577 attctgtgaaaaagaaggaattgttgtgattctttgaaataactttttaaattgattgattaagtgattata 12072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 38599447 - 38599410
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38599447 tgaaatagtttttcaaattgattgattaagtgattata 38599410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 18916073 - 18916110
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| | |||||||||||||||||||||||||||||    
T  18916073 tgaaatagcttttcaaattgattgattaagtgattata 18916110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 1600 - 1663
Alignment:
Q  265 aaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||| ||||||| ||||||||||||||||||  ||||| ||||| ||| | ||||||||||||    
T  1600 aaaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattata 1663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 7790313 - 7790250
Alignment:
Q  265 aaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||| ||||||| ||||||||||||||||||  ||||| ||||| ||| | ||||||||||||    
T  7790313 aaaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattata 7790250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 7810899 - 7810836
Alignment:
Q  265 aaaaagaaaggataattgtgattctttgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||| ||||||| ||||||||||||||||||  ||||| ||||| ||| | ||||||||||||    
T  7810899 aaaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattata 7810836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 30915272 - 30915344
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattcttt-----gaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||||||||| |||  ||||||||||||     ||||| | |||||||||||| ||||||||||||||||    
T  30915272 tgcgaaaaagaaatgattgttgtgattctttttaatgaaatagcttttcaaattgactgattaagtgattata 30915344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 43968098 - 43968126
Alignment:
Q  300 ttttcaaattgattgattaagtgattata 328  Q
    |||||||||||||||||||||||||||||    
T  43968098 ttttcaaattgattgattaagtgattata 43968126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 26633442 - 26633371
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattcttt----gaaatcgtttttcaaattgattgattaagtgattata 328  Q
    ||||||||||||| |||  ||||||||||||    ||||| | |||||||||||| ||||||||||||||||    
T  26633442 tgcgaaaaagaaatgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattata 26633371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 4100013 - 4099976
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| | |||||||||||||||||||||||||||||    
T  4100013 tgaaatagcttttcaaattgattgattaagtgattata 4099976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 36438370 - 36438407
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  36438370 tgaaatggtttttcaaattgactgattaagtgattata 36438407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 35653965 - 35654036
Alignment:
Q  261 tgcgaaaaagaaaggataattgtgattcttt----gaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||||||||||  ||  ||||||||||||    ||||| | |||||||||||||||||||||||||||||    
T  35653965 tgcgaaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattata 35654036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 32130809 - 32130846
Alignment:
Q  291 tgaaatcgtttttcaaattgattgattaagtgattata 328  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  32130809 tgaaatagtttttcaaattgactgattaagtgattata 32130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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