View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_low_29 (Length: 326)

Name: NF13425_low_29
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_low_29
NF13425_low_29
[»] chr2 (1 HSPs)
chr2 (232-308)||(35672422-35672498)
[»] chr4 (2 HSPs)
chr4 (252-308)||(29873840-29873896)
chr4 (252-308)||(29868729-29868785)
[»] chr7 (1 HSPs)
chr7 (266-308)||(44576450-44576492)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 35672498 - 35672422
Alignment:
Q  232 ttgttttgtcattttgcagcaagtggaaatatcacaagaaatgcagcttgttcattttgattttaataggtaaagct 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35672498 ttgttttgtcattttgcagcaagtggaaatatcacaagaaatgcagcttgttcattttgattttaataggtaaagct 35672422  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 29873840 - 29873896
Alignment:
Q  252 aagtggaaatatcacaagaaatgcagcttgttcattttgattttaataggtaaagct 308  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29873840 aagtggaaatatcagaagacatgcagcttgttcattttgattttaataggtaaagct 29873896  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 29868729 - 29868785
Alignment:
Q  252 aagtggaaatatcacaagaaatgcagcttgttcattttgattttaataggtaaagct 308  Q
    |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||    
T  29868729 aagtggaaatatcagaagacatgcagcttgttcattttgatttcaataggtaaagct 29868785  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 44576450 - 44576492
Alignment:
Q  266 caagaaatgcagcttgttcattttgattttaataggtaaagct 308  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||    
T  44576450 caagacatgcagcttgttcattttgatttcaatcggtaaagct 44576492  T

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