View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_low_30 (Length: 326)

Name: NF13425_low_30
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_low_30
NF13425_low_30
[»] chr2 (1 HSPs)
chr2 (19-309)||(40687510-40687800)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 40687800 - 40687510
Alignment:
Q  19 aaaaaatacaatgcaaactttagtatttataaaatacttgaatcgctttgagacaagaaaatatgtttttgatccattaatattagagaaggaccggatt 118  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  40687800 aaaatatacaatgcaaactttagtatttataaaatacttgactcgctttgagacaagaaaagatgtttttgatccattaatattagagaagaaccggatt 40687701  T
Q  119 caactgcatttcttacacaaccctattttgaagaatatttttagctctagagatagttgctaaaattgattttaaaatatggcttaaattatgtcaaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  40687700 caactgcatttcttacacaaccctattttgaagaatatttttagctctagagatagtggccaaaattgattttaaaatatggcttaaattatgtcaaaag 40687601  T
Q  219 tgaattgaacaagtttgaggctaaaggtttcatttgaaggaaagaaaataaatctgacatgcacttaattaattgccaaaatattgagact 309  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40687600 ttaattgaacaagtttgaggctaaaggtttcatttgaaggaaagaaaataaatctgacatgcacttaattaattgccaaaatattgagact 40687510  T

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