View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_low_32 (Length: 315)

Name: NF13425_low_32
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_low_32
NF13425_low_32
[»] chr2 (6 HSPs)
chr2 (97-186)||(35918850-35918939)
chr2 (194-289)||(35887335-35887430)
chr2 (165-247)||(35889707-35889789)
chr2 (182-247)||(35554550-35554615)
chr2 (200-248)||(34690058-34690106)
chr2 (200-248)||(34712470-34712518)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 35918850 - 35918939
Alignment:
Q  97 ttccatagtgtttcttgacattaattacagaaaatcaaaatttaatcttcttgttcttgtagcccagaaatggaggaggatcaaaagaac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | | |||||||||||| | ||||||    
T  35918850 ttccatagtgtttcttgacattaattacagaaaatcaaaatttattcttcttgttcttgtggccaaaatatggaggaggatgataagaac 35918939  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 35887335 - 35887430
Alignment:
Q  194 aaaagatgatcagttccactactgatcagaaagatgatgtagcaatgaatgaggccggttgtgcaaaagtggaggaggatcgtaagaacaaggcag 289  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| | | || | |||||| |||||||||||| ||||||||||||||    
T  35887335 aaaagatgatcagttccactgctgatcagaaagatgatttagcaatgaatgaagtcagtggcgcaaaaatggaggaggatcataagaacaaggcag 35887430  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 35889707 - 35889789
Alignment:
Q  165 aatggaggaggatcaaaagaacgagccacaaaagatgatcagttccactactgatcagaaagatgatgtagcaatgaatgagg 247  Q
    ||||||| ||||||  ||||||| | |||||||||||||| |||| || ||||||||||||||||||| ||||||||| ||||    
T  35889707 aatggagaaggatcttaagaacgtgacacaaaagatgatcggttctacgactgatcagaaagatgatgcagcaatgaacgagg 35889789  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 35554615 - 35554550
Alignment:
Q  182 agaacgagccacaaaagatgatcagttccactactgatcagaaagatgatgtagcaatgaatgagg 247  Q
    |||| ||| |||||||||||||  |||| || ||||||||||||||||||| ||||||||||||||    
T  35554615 agaatgaggcacaaaagatgattggttctacgactgatcagaaagatgatgcagcaatgaatgagg 35554550  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 34690106 - 34690058
Alignment:
Q  200 tgatcagttccactactgatcagaaagatgatgtagcaatgaatgaggc 248  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  34690106 tgatcagttccataactgatcagaaagatgatgtagcaatgaaagaggc 34690058  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 34712518 - 34712470
Alignment:
Q  200 tgatcagttccactactgatcagaaagatgatgtagcaatgaatgaggc 248  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  34712518 tgatcagttccataactgatcagaaagatgatgtagcaatgaaagaggc 34712470  T

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