View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_low_35 (Length: 303)
Name: NF13425_low_35
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 282
Target Start/End: Complemental strand, 21093470 - 21093193
Alignment:
| Q |
4 |
ggagaagcaaaggagacctggccttaaattgatagtactagccgaccaaattttccgtaagtcctcggccaactcaaaatgaagtcataataaccccttc |
103 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21093470 |
ggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatgaagtcataataaccccttc |
21093371 |
T |
|
| Q |
104 |
caagcggcaccatttacatttgtgtataacctttaaaatcgagcctagcttcgtagccaaatcttgcaccgtgtaaggtttgtcacccttgacctaagtc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
21093370 |
caagcggcaccatttacatttgtgtataaccttcaaaatcgagcctagcttcgtagccaaatcttgcgccgtgtaaggtttgtcacccttgacccaagtc |
21093271 |
T |
|
| Q |
204 |
agacgtccccggagtgcgttttgacggtcttctaaacctttcttgtattcctcctgcccaagtttactacaaaatgcat |
282 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21093270 |
agacgtccctggagtgcgttttgacggtctgctaaacctttcgtgtatt-ctcctgcccaagtttactacaaaatgcat |
21093193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 31437553 - 31437745
Alignment:
| Q |
75 |
actcaaaatgaag-tcataataaccccttccaagcggcaccatttaca--tttgtgtataacctttaaaatcgagcctagcttcgtagccaaatcttgca |
171 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| |||||||| | ||| ||| ||||||| ||| |||||||||||||||||||||||| ||| |
|
|
| T |
31437553 |
actcaaaatgaaaatcataatatccccttccaagcgacaccattttccattttttgtgtaaccttccaaaccgagcctagcttcgtagccaaatcccgca |
31437652 |
T |
|
| Q |
172 |
ccgtgtaaggtttgtcacccttgacctaagtcagacgtccccggagtgcgttttgacggtcttctaaacctttcttgtattcctcctgcccaa |
264 |
Q |
| |
|
| ||||||| || || ||||| ||| ||||||||| ||||||||| || || |||| ||| ||||||| || |||||| |||||||||| |
|
|
| T |
31437653 |
tcatgtaaggcttatcgcccttaaccaaagtcagacttccccggagggcattctgacagtcagctaaaccctttgagtattcttcctgcccaa |
31437745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 34216817 - 34216923
Alignment:
| Q |
13 |
aaggagacctggccttaaattgatagtactagccgaccaaattttccgtaagtcctcggccaactcaaaatg-aagtcataataaccccttccaagcggc |
111 |
Q |
| |
|
||||||| ||||| | |||| || |||| ||||||||||||||| |||||||||| ||| |||||||||| || || ||||| ||| | |||||||| |
|
|
| T |
34216817 |
aaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccatgccaagcggt |
34216916 |
T |
|
| Q |
112 |
accattt |
118 |
Q |
| |
|
||||||| |
|
|
| T |
34216917 |
accattt |
34216923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University