View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_low_45 (Length: 238)

Name: NF13425_low_45
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_low_45
NF13425_low_45
[»] chr3 (1 HSPs)
chr3 (1-203)||(21093440-21093645)
[»] chr4 (3 HSPs)
chr4 (14-200)||(19551445-19551631)
chr4 (68-172)||(10674800-10674904)
chr4 (68-172)||(10888440-10888544)
[»] chr7 (1 HSPs)
chr7 (68-147)||(20942434-20942513)
[»] chr6 (1 HSPs)
chr6 (10-145)||(34216694-34216829)
[»] chr5 (1 HSPs)
chr5 (71-172)||(11722527-11722628)
[»] chr2 (1 HSPs)
chr2 (68-147)||(25976637-25976716)
[»] chr8 (2 HSPs)
chr8 (62-172)||(14411570-14411680)
chr8 (80-192)||(4581787-4581899)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21093440 - 21093645
Alignment:
Q  1 caatttaaggccaggtctcctttgtttctcccaatggctgaaagacttttctcattattcacagaaccaaactcatgcttccatttggatccgcttggtc 100  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21093440 caatttaaggccaggtctccttcgtttctcccaatggctaaaagacttttctcattattcacagaaccagactcatgcttccatttggatccgcttggtc 21093539  T
Q  101 gaattaccacaagaatattagcaggaacgtactttgaaggaaatagcaagagcggttggtaccccaattgacttggatgcc---cctacacgtaatagag 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||   || |||||||||||||    
T  21093540 gaattaccacaagaatattagcaggaacgtactttgaaggaaatagcaagcgtgattggtaccccaattgacttggatgcccggcccacacgtaatagag 21093639  T
Q  198 cttatg 203  Q
    ||||||    
T  21093640 cttatg 21093645  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 19551445 - 19551631
Alignment:
Q  14 ggtctcctttgtttctcccaatggctgaaagacttttctcattattcacagaaccaaactcatgcttccatttggatccgcttggtcgaattaccacaag 113  Q
    ||||||||| || |||| |||| |  ||| ||||||  |||||||||| |||| |||||||| |||||||||||||| |||||||| ||||| || ||||    
T  19551445 ggtctccttcgtctctcacaatagacgaaggactttaatcattattcatagaagcaaactcacgcttccatttggattcgcttggttgaattgccccaag 19551544  T
Q  114 aatattagcaggaacgtactttgaaggaaatagcaagagcggttggtaccccaattgacttggatgcccctacacgtaatagagctt 200  Q
    |||||||   | |||| ||  |||||||| ||| ||| || || ||||| || ||||| ||||||| ||| ||||||| ||| ||||    
T  19551545 aatattaatggaaacggacactgaaggaagtagaaagtgcagtgggtacaccgattgatttggatggcccgacacgtagtagggctt 19551631  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 10674800 - 10674904
Alignment:
Q  68 caaactcatgcttccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaatagcaagagcggttggtaccccaa 167  Q
    |||||||||| |||  ||||||| || || || || ||||| |||||||||| || |||  | | |||||||||||||||||| ||||| ||||| || |    
T  10674800 caaactcatgtttcactttggattcgattagtggagttaccgcaagaatattggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccga 10674899  T
Q  168 ttgac 172  Q
    |||||    
T  10674900 ttgac 10674904  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 10888440 - 10888544
Alignment:
Q  68 caaactcatgcttccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaatagcaagagcggttggtaccccaa 167  Q
    |||||||||| |||  ||||||| || || || || ||||| |||||||||| || |||  | | |||||||||||||||||| ||||| ||||| || |    
T  10888440 caaactcatgtttcactttggattcgattagtggagttaccgcaagaatattggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccga 10888539  T
Q  168 ttgac 172  Q
    |||||    
T  10888540 ttgac 10888544  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 20942513 - 20942434
Alignment:
Q  68 caaactcatgcttccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaatagc 147  Q
    |||||||||| |||  ||||||| |||||||| || ||||| ||||| |||| || ||||||||| ||||||||||||||    
T  20942513 caaactcatgtttcgctttggattcgcttggtggagttaccgcaagagtattggcgggaacgtaccttgaaggaaatagc 20942434  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 34216829 - 34216694
Alignment:
Q  10 gccaggtctcctttgtttctcccaatggctgaaagacttttctcattattcacagaaccaaactcatgcttccatttggatccgcttggtcgaattacca 109  Q
    ||||| ||||||| || |||||||||||  ||| || |||  | | ||||||||||| || ||||| ||||| || |||||||| ||||| || |||||     
T  34216829 gccagatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatccgtttggttgacttaccg 34216730  T
Q  110 caagaatattagcaggaacgtactttgaaggaaata 145  Q
    |||||||||| || |||||  || ||||||||||||    
T  34216729 caagaatattggcgggaacaaacattgaaggaaata 34216694  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 11722527 - 11722628
Alignment:
Q  71 actcatgcttccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaatagcaagagcggttggtaccccaattg 170  Q
    ||||||| |||  ||||||| || ||||| || ||||| |||||||||| || |||  | | |||||||||||||||||| ||||| ||||| |||||||    
T  11722527 actcatgtttcactttggattcgattggtggagttaccgcaagaatattggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccaattg 11722626  T
Q  171 ac 172  Q
    ||    
T  11722627 ac 11722628  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 25976716 - 25976637
Alignment:
Q  68 caaactcatgcttccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaatagc 147  Q
    |||||||||| |||  ||||||| |||||||| || ||||| ||||| |||| || |||||| || ||||||||||||||    
T  25976716 caaactcatgtttcgctttggattcgcttggtggagttaccgcaagagtattggcgggaacgaaccttgaaggaaatagc 25976637  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 14411570 - 14411680
Alignment:
Q  62 cagaaccaaactcatgcttccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaatagcaagagcggttggta 161  Q
    ||||| || ||||||| |||  ||||||| || ||||| || ||||| || ||||||| || |||  | | |||||||||||||||||||||||| ||||    
T  14411570 cagaaacagactcatgtttcactttggattcgattggtggagttaccgcaggaatattggcgggagagaattttgaaggaaatagcaagagcggtaggta 14411669  T
Q  162 ccccaattgac 172  Q
    | || ||||||    
T  14411670 caccgattgac 14411680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 4581899 - 4581787
Alignment:
Q  80 tccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaatagcaagagcggttggtaccccaattgacttggatg 179  Q
    ||||||||||||||| | || |||||||| |||||||||| ||  ||||| ||   |||||||| ||| || |||||||| | ||| |||||  ||||||    
T  4581899 tccatttggatccgcattgtggaattacctcaagaatattggcgtgaacggacaccgaaggaaacagctagtgcggttggaatcccgattgaggtggatg 4581800  T
Q  180 cccctacacgtaa 192  Q
    | || ||||||||    
T  4581799 ctccaacacgtaa 4581787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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