View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_low_47 (Length: 238)

Name: NF13425_low_47
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_low_47
NF13425_low_47
[»] chr6 (8 HSPs)
chr6 (1-222)||(11621942-11622163)
chr6 (89-222)||(11628352-11628485)
chr6 (98-222)||(11670266-11670390)
chr6 (97-218)||(11706469-11706590)
chr6 (98-221)||(11735651-11735774)
chr6 (97-218)||(11666937-11667058)
chr6 (91-219)||(11759722-11759850)
chr6 (109-219)||(12089573-12089683)
[»] scaffold0196 (1 HSPs)
scaffold0196 (99-222)||(16441-16564)
[»] scaffold0019 (1 HSPs)
scaffold0019 (98-222)||(4928-5052)
[»] chr8 (1 HSPs)
chr8 (96-221)||(16389730-16389855)
[»] chr1 (1 HSPs)
chr1 (89-162)||(44815438-44815511)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11621942 - 11622163
Alignment:
Q  1 ttagattcatcaggtacattttcaagtctcattgtcatagctatgttagaagttcattgtgtttccaagttagtattaactagtgaagattgttacgcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11621942 ttagattcatcaggtacattttcaagtctcattgtcatagctacgttagaagttcattgtgtttccaagttagtattaactagtgaagattgttacgcag 11622041  T
Q  101 ttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11622042 ttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagc 11622141  T
Q  201 aactgcgtcaattgataattct 222  Q
    ||||||||||||||||||||||    
T  11622142 aactgcgtcaattgataattct 11622163  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 11628485 - 11628352
Alignment:
Q  89 attgttacgcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggt 188  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||   || |||||    
T  11628485 attgttacgcagttgttgaagatggatcaaactggagcatgggacaaaggcagttattctgtttggggcgtgcgcttttgaggagaagtcgaatattggt 11628386  T
Q  189 attggacgaagcaactgcgtcaattgataattct 222  Q
     ||||| ||||||||||| || ||||||||||||    
T  11628385 gttggatgaagcaactgcttcgattgataattct 11628352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 11670390 - 11670266
Alignment:
Q  98 cagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacga 197  Q
    |||||||||| ||||||||||| ||||||||||||||| | |||||||| |||||||| ||||  ||||||||  |||||| ||| ||||| ||||||||    
T  11670390 cagttgttgaagatggatcaaattggagcatgggacaaaggcagttattttgtttggggcgtgtacttttgaggcgaagtaggatattggtgttggacga 11670291  T
Q  198 agcaactgcgtcaattgataattct 222  Q
    ||||||||| |||||||||||||||    
T  11670290 agcaactgcttcaattgataattct 11670266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 11706590 - 11706469
Alignment:
Q  97 gcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacg 196  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||| || ||||||   || |||||| | || |    
T  11706590 gcagttgttgaagatggatcaaactggagcatgggacaaaggcagttattctgtttggggcgtgcgcttttaaggagaagtcgaatattggtactcgatg 11706491  T
Q  197 aagcaactgcgtcaattgataa 218  Q
    |||||||||| || ||||||||    
T  11706490 aagcaactgcatcgattgataa 11706469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 11735774 - 11735651
Alignment:
Q  98 cagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacga 197  Q
    |||||||||| ||||||||||| |||||||| ||||||   || |||||||||||||| |||||| |||||||  |||||| ||| || || ||||| ||    
T  11735774 cagttgttgaagatggatcaaattggagcattggacaaaagcaattattctgtttggggcgtgctattttgaggcgaagtaggatattagtgttggatga 11735675  T
Q  198 agcaactgcgtcaattgataattc 221  Q
    ||||||||| ||||||||||||||    
T  11735674 agcaactgcatcaattgataattc 11735651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 11666937 - 11667058
Alignment:
Q  97 gcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacg 196  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||| || ||||||   || ||| || | || |    
T  11666937 gcagttgttgatgatggatcaaactggagcatgggacaaaggcagttattctgtttggggcgtgcacttttaaggagaagtcgaatattgatacttgatg 11667036  T
Q  197 aagcaactgcgtcaattgataa 218  Q
    |||||||||| || ||||||||    
T  11667037 aagcaactgcatcgattgataa 11667058  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 11759722 - 11759850
Alignment:
Q  91 tgttacgcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtat 190  Q
    ||||| |||||||| || |||||||||||||||||||| |||||| | ||  |||||||||| || || ||||||||||| |||| || ||| ||||| |    
T  11759722 tgttatgcagttgtcgaagatggatcaaactggagcattggacaaaggcaactattctgtttagggcgcgctcttttgaggagaaataggatattggtgt 11759821  T
Q  191 tggacgaagcaactgcgtcaattgataat 219  Q
    |||| ||||||||||| ||||| ||||||    
T  11759822 tggatgaagcaactgcatcaatcgataat 11759850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 12089683 - 12089573
Alignment:
Q  109 gatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgcgt 208  Q
    |||||||| ||||||||||| |||||| | ||  |||||||||| || || ||||||||||| ||||||| ||| |||||  | || ||||||||||| |    
T  12089683 gatggatcgaactggagcattggacaaaggcaactattctgtttagggcgcgctcttttgaggagaagtaggatattggtgctagatgaagcaactgcat 12089584  T
Q  209 caattgataat 219  Q
    |||||||||||    
T  12089583 caattgataat 12089573  T

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Target: scaffold0196 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 16441 - 16564
Alignment:
Q  99 agttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaa 198  Q
    |||| |||| ||||||||||||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||||||| ||| ||||| |||||||||    
T  16441 agttcttgaagatggatcaaactggagtatgggacaaaggcagttattctgtttagggcgcgctcttttgaggagaagtaggatattggtgttggacgaa 16540  T
Q  199 gcaactgcgtcaattgataattct 222  Q
    |||||||| |||||||||||||||    
T  16541 gcaactgcttcaattgataattct 16564  T

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Target: scaffold0019 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 5052 - 4928
Alignment:
Q  98 cagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacga 197  Q
    |||||||||| | ||||||||| ||||||||||||||| |||||||||| ||||| |  || ||||||||||| ||||||| ||| ||||| ||||| ||    
T  5052 cagttgttgaaggtggatcaaattggagcatgggacaaagacagttattttgtttagcgcgcgctcttttgaggagaagtaggatattggtgttggatga 4953  T
Q  198 agcaactgcgtcaattgataattct 222  Q
    ||||||||| ||| |||||||||||    
T  4952 agcaactgcatcagttgataattct 4928  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 16389855 - 16389730
Alignment:
Q  96 cgcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggac 195  Q
    |||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||| ||||| ||||| || |||||||  || |||||| | ||     
T  16389855 cgcagttgttgaggatggatcaaattggagcatgggacaaaggcaattattctgtttggggcgtgcgcttttaaggagaagtagaatattggtacttgat 16389756  T
Q  196 gaagcaactgcgtcaattgataattc 221  Q
    ||||||||||| ||| | ||||||||    
T  16389755 gaagcaactgcatcagtcgataattc 16389730  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 44815438 - 44815511
Alignment:
Q  89 attgttacgcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgct 162  Q
    |||||||  |||| ||||| |||||  |||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  44815438 attgttatacagtggttgaagatggggcaaattggagcatgggacaacggcagttattctgtttgggccgtgct 44815511  T

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