View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_48 (Length: 237)
Name: NF13425_low_48
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 37811761 - 37811890
Alignment:
| Q |
100 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37811761 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgcttcgatttag |
37811860 |
T |
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| Q |
200 |
acctacctttgctaccctctctttcatctc |
229 |
Q |
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||||||||| ||||||||||||||| |||| |
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| T |
37811861 |
acctaccttagctaccctctctttcgtctc |
37811890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 37811638 - 37811738
Alignment:
| Q |
1 |
aatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37811638 |
aatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctcctacgttccttctttgctt |
37811737 |
T |
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| Q |
101 |
c |
101 |
Q |
| |
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| |
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| T |
37811738 |
c |
37811738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 52357166 - 52357287
Alignment:
| Q |
100 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag |
199 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||| ||| ||||||||||||| |||||||||| |
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| T |
52357166 |
tccaattcccgatcctcgctatgttctctgtctttcctcttatgcgaggagtatcgc---tccaatgaatcttccctctcttcatcgcgcttcgatttag |
52357262 |
T |
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| Q |
200 |
acctacctttgctaccctctctttc |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
52357263 |
acctacctttgctaccctctctttc |
52357287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 52356216 - 52356283
Alignment:
| Q |
1 |
aatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt |
68 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52356216 |
aatttctgcatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt |
52356283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 17209436 - 17209565
Alignment:
| Q |
100 |
tccaattccctatcctcgctatgttctctatctttcctcttatgcaaggagtatcgagtttccactgaatactccatctcttcatcgcgtttcgatttag |
199 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||| | | || |||||||| |||||||||||| | | | |||||| || |
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| T |
17209436 |
tccaattcccggtcctcgctatgttctctatctttcctcttatgcgaggagtattgcggtttcactgaatcctccatctcttcgtagtgcttcgatatat |
17209535 |
T |
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| Q |
200 |
acctacctttgctaccctctctttcatctc |
229 |
Q |
| |
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||||||||||| ||||||||||||| |||| |
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|
| T |
17209536 |
acctacctttgttaccctctctttcgtctc |
17209565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17209112 - 17209179
Alignment:
| Q |
1 |
aatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt |
68 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17209112 |
aatttctgcatttgtaaagccttcttagcctttgctaaggcatcactactagagaagcttccaagttt |
17209179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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