View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_8 (Length: 563)
Name: NF13425_low_8
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 551
Target Start/End: Complemental strand, 3119695 - 3119151
Alignment:
| Q |
7 |
cttttttgctttctgatcaattgctaggaagctggaacaatctatactcatcaccagaagacagtcattgtggatgctgatgctggtcagcataaaagaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3119695 |
cttttttgctttctgatcaattgctaggaagctggaacaatctatactcatcaccagaagacagtcattgtggatgctgatgctggtcagcataaaagaa |
3119596 |
T |
|
| Q |
107 |
agattgtagctttcatcggaggccttgatttatgtctcggaagatatgatactccagcgcattctctctttaggactttgcagacaacacacaaagatga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3119595 |
agattgtagctttcatcggaggccttgatttatgtctcggaagatatgatactccagcgcattctctctttaggactttgcagacaacacacaaagatga |
3119496 |
T |
|
| Q |
207 |
ctttcataatcctaactacgaggttagtcatccattttttattttcattatttctcttaagagtctctcatcggataaaatatggtctgaaaatatatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3119495 |
ctttcataatcctaactacgaggttagtcatccattttttattttcattatttctcttaagagtctctcatcggataaaatatggtctgaaaatatatta |
3119396 |
T |
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| Q |
307 |
caagtggtggattatcctcaccttacaaatcgggttttgtagggttctgttacgggttgtccaagacagccatggcatgatttgcattccaaagttgatg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3119395 |
taagtggtggattatcctcaccttacaaatcgggttttgtagggttctgttaccggttgtccaagacaaccatggcatgatttgcattccaaagttgatg |
3119296 |
T |
|
| Q |
407 |
gtcctgctgcctatgacatcctcaccaattatgaagagcgttggttgatggcattaaaaatgactacacttcaaaagatgaaaacttcacatgatgattc |
506 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3119295 |
gtcctgctgcctatgacatcctcaccaattttgaggagcgttggttgatggcattaaaaatgactacacttcaaaagatgaaaacttcacatgatgattc |
3119196 |
T |
|
| Q |
507 |
attactgaaaattgatagaatctctgacattgtgggcattgatga |
551 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3119195 |
attactgaaaattgatagaatctctgacattgttggcattgatga |
3119151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 3113502 - 3113259
Alignment:
| Q |
10 |
ttttgctttctgatcaattgctaggaagctggaacaatctatactcatcaccagaagacagtcattgtggatgctgatgctggtcagcataaaagaaaga |
109 |
Q |
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||||||||| || ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3113502 |
ttttgctttttgctcaattgtcaggaagctggaacaatctatacccatcatcagaagacagtcattgtggatgccgatgctggtcagcataaaagaaaga |
3113403 |
T |
|
| Q |
110 |
ttgtagctttcatcggaggccttgatttatgtctcggaagatatgatactccagcgcattctctctttaggactttgcagacaacacacaaagatgactt |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3113402 |
ttgtagctttcattggaggccttgatttatgtctcggaagatatgatactccagcacattctctctttaggactttgcagacaacacacaaagatgactt |
3113303 |
T |
|
| Q |
210 |
tcataatcctaactacgaggttagtcatccattttttattttca |
253 |
Q |
| |
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|||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
3113302 |
tcataatcctaactttgtggttagttatccattttttattttca |
3113259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 347 - 551
Target Start/End: Complemental strand, 3112915 - 3112711
Alignment:
| Q |
347 |
agggttctgttacgggttgtccaagacagccatggcatgatttgcattccaaagttgatggtcctgctgcctatgacatcctcaccaattatgaagagcg |
446 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
3112915 |
agggttctgttactggttgtccaagacaaccatggcatgatttgcattccaaagttgatggtcctgctgcctatgacattctcaccaattttgaggagcg |
3112816 |
T |
|
| Q |
447 |
ttggttgatggcattaaaaatgactacacttcaaaagatgaaaacttcacatgatgattcattactgaaaattgatagaatctctgacattgtgggcatt |
546 |
Q |
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|||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
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| T |
3112815 |
ttggttaagagcactaaaaatgaatacacttcaaaagatgaaaacttcacatgatgattcattactgaaaattgacagaatctctgacattatcggcatt |
3112716 |
T |
|
| Q |
547 |
gatga |
551 |
Q |
| |
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|||| |
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| T |
3112715 |
catga |
3112711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 28532731 - 28532905
Alignment:
| Q |
32 |
aggaagctggaacaatctatactcatcaccagaagacagtcattgtggatgctgatgctggtcagcataaaagaaagattgtagctttcatcggaggcct |
131 |
Q |
| |
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|||||| |||||| || ||||| ||||| ||||| || || |||||||||||||||||||| | | | |||||| |||||||| || |||| || || |
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| T |
28532731 |
aggaagttggaaccatatatacacatcatcagaaaactgtaattgtggatgctgatgctggaaataacagaagaaaaattgtagcatttgtcggtggact |
28532830 |
T |
|
| Q |
132 |
tgatttatgtctcggaagatatgatactccagcgcattctctctttaggactttgcagacaacacacaaagatga |
206 |
Q |
| |
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|||||||||| || ||||||||||||| |||| ||||||||| ||| || || |||| ||| |||||||| |
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| T |
28532831 |
tgatttatgtgatggccgatatgatactccccagcatcctctctttaagacattacaaacaatacataaagatga |
28532905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 12694402 - 12694342
Alignment:
| Q |
32 |
aggaagctggaacaatctatactcatcaccagaagacagtcattgtggatgctgatgctgg |
92 |
Q |
| |
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|||||| ||||||||| ||||| ||||| |||||||| || ||||| |||||||||||||| |
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| T |
12694402 |
aggaagttggaacaatatatacacatcatcagaagactgtaattgtagatgctgatgctgg |
12694342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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