View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_low_9 (Length: 550)
Name: NF13425_low_9
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 531
Target Start/End: Original strand, 12165946 - 12166460
Alignment:
| Q |
12 |
atgaactgttacaacattttggtgtaacttaaccaaacccataatagttcgtcctgaaccaaattgaactgatgtaaaaacttgatggaacagaacaatt |
111 |
Q |
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| T |
12165946 |
atgaactgttacaacattttggtgtaacttaaccaaacccataatagttcgtcctgaaccaaattgaactgatgttaaaatttgatggaacagaacaatt |
12166045 |
T |
|
| Q |
112 |
atgtgttttcaaatagtaactacnnnnnnncgtccttaattttctacaaaggtagttgcggttttattttccttgtcnnnnnnnnnnnncagcaactacc |
211 |
Q |
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| T |
12166046 |
atgtgttttcaaatagtaactactttttttcgtccttaattttctacaaagatagatgcggttttattttccttatcaaaaataaaaaacaacaactacc |
12166145 |
T |
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| Q |
212 |
tttatataaaattaaattatacattcttaaactgaactatttctatgaactaaactattgtatgttgcatttttcaaaccaaagttaaaaggcacacagt |
311 |
Q |
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| T |
12166146 |
tttgtaaaaaattaaattatacattcttgaactgaactatttctatg----aaactattgaatgttgcatttttcaaaccaaagtt-aaaggcacacatt |
12166240 |
T |
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| Q |
312 |
ttgaacattaaccgattttggcctatnnnnnnnnnnnnnnnnnnnngaattaaaccgtgaaggataagtcagttcatgttctgtccttcacggttctttt |
411 |
Q |
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|||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12166241 |
ttgagcattaatcgattttggcctataaaaaaaaccaaaccgaaaagaattaaaccgtgaaggataagtcagttcatgttcggtccttcacggttctttt |
12166340 |
T |
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| Q |
412 |
caatatggtttagtaattgatttcaannnnnnnnnnnnctttatcaaacttaatataagggactaaattgaaagtttactccacaaattaacctttagca |
511 |
Q |
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| T |
12166341 |
caatatggtttagcaattgatttcaattttttgtttttctttatcaaacttaatataagggactaaattgaaagtttactccacaaattaacctttagca |
12166440 |
T |
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| Q |
512 |
aaataattaccagaatttgt |
531 |
Q |
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| T |
12166441 |
aaataattaccagaatttgt |
12166460 |
T |
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