View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13426_low_1 (Length: 501)
Name: NF13426_low_1
Description: NF13426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13426_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 15 - 482
Target Start/End: Original strand, 35072013 - 35072483
Alignment:
| Q |
15 |
catcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctgg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072013 |
catcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctgg |
35072112 |
T |
|
| Q |
115 |
tacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaagta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072113 |
tacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaagta |
35072212 |
T |
|
| Q |
215 |
gagaatggggaattctcaaaagggatgttgttgcctggtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgttgtagagaca |
314 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072213 |
gagaatggggaattctcaaaagggctgttgttgcctggtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgttgtagagaca |
35072312 |
T |
|
| Q |
315 |
tgttctgtcttatttgaagttgttttggaaggtgaagagaattctccgtaaacggacataattagatgtctccattcttaggatgttttacttgatcttt |
414 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
35072313 |
tgttctgtcttatttgaagttgttttggaaggtgaggagaattctccgtaaacggacataattagatgtctccattcttaggatattctacttgatcttt |
35072412 |
T |
|
| Q |
415 |
gtggaatttatgttatgctattattaactcttgtgtataaatagaatacaat---accaatacttaaaata |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35072413 |
gtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaccaatacttaaaata |
35072483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 35072892 - 35073001
Alignment:
| Q |
54 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
153 |
Q |
| |
|
|||||||||| || || ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
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| T |
35072892 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctcctt |
35072991 |
T |
|
| Q |
154 |
ccaatcaatc |
163 |
Q |
| |
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|||||||||| |
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|
| T |
35072992 |
ccaatcaatc |
35073001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 35106968 - 35106859
Alignment:
| Q |
54 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
153 |
Q |
| |
|
|||||||||| || || ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
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|
| T |
35106968 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctcctt |
35106869 |
T |
|
| Q |
154 |
ccaatcaatc |
163 |
Q |
| |
|
|||||||||| |
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|
| T |
35106868 |
ccaatcaatc |
35106859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 36296653 - 36296774
Alignment:
| Q |
42 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
141 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||| ||||| |||||||| || || ||||| || || | ||||||||| || || || ||||| |
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|
| T |
36296653 |
tcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttc |
36296752 |
T |
|
| Q |
142 |
tggagtttccttccaatcaatc |
163 |
Q |
| |
|
||| || ||||||||||||||| |
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|
| T |
36296753 |
tggggtctccttccaatcaatc |
36296774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 400 - 482
Target Start/End: Original strand, 24013928 - 24014010
Alignment:
| Q |
400 |
ttttacttgatctttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaata |
482 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24013928 |
ttttacttgatccttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaata |
24014010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 24014379 - 24014500
Alignment:
| Q |
42 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
141 |
Q |
| |
|
|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
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|
| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
|
| Q |
142 |
tggagtttccttccaatcaatc |
163 |
Q |
| |
|
||| || ||||||||||||||| |
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|
| T |
24014479 |
tggggtctccttccaatcaatc |
24014500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 24040948 - 24041053
Alignment:
| Q |
54 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
153 |
Q |
| |
|
|||||||||| || || ||||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
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|
| T |
24040948 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctcctt |
24041047 |
T |
|
| Q |
154 |
ccaatc |
159 |
Q |
| |
|
|||||| |
|
|
| T |
24041048 |
ccaatc |
24041053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
72 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
153 |
Q |
| |
|
||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
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|
| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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