View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13426_low_11 (Length: 238)
Name: NF13426_low_11
Description: NF13426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13426_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 7675395 - 7675176
Alignment:
| Q |
19 |
atttttccaactcatatgtccatgacttcatcattgcagccacaccaaataattcttttaatcgtacgatccaaacaattacaggtatattggggaacca |
118 |
Q |
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| T |
7675395 |
atttttccaactcatatgtccatgacttcatcattgcagccacaccaaataattcttttaatcgtacgatccaaacgattacaggtatattggggaacca |
7675296 |
T |
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| Q |
119 |
cttaatttgcatgatnnnnnnnggacaacattagccatggttattctacctagtatatttagaattcttcctttccatccaattttgattccactttatc |
218 |
Q |
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| T |
7675295 |
cttaatttgcatgataaaaaaaggacaacattagccatggttattctacctagtttatttagaattcttcctttccatccaattttgattccactttatc |
7675196 |
T |
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| Q |
219 |
aaaaatctcaaggaaatcct |
238 |
Q |
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|||||||||||||||||||| |
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| T |
7675195 |
aaaaatctcaaggaaatcct |
7675176 |
T |
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