View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13426_low_13 (Length: 233)
Name: NF13426_low_13
Description: NF13426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13426_low_13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 35645775 - 35645855
Alignment:
| Q |
33 |
ctatctaacggttttagaatattcacacaacactcgtgcttgttggtcttcccaccaaggaacattttcccttatgaaatt |
113 |
Q |
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| T |
35645775 |
ctatctaacggttttagacgattcacacaacactcgtgcttgttggtcttcccaccaaggaacattttcccttatgaaatt |
35645855 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 32651336 - 32651301
Alignment:
| Q |
198 |
tcatctaatctaatctaacttattcctaatcctagt |
233 |
Q |
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| T |
32651336 |
tcatctaatctaatctaacttattcctaatcctagt |
32651301 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 31444761 - 31444794
Alignment:
| Q |
200 |
atctaatctaatctaacttattcctaatcctagt |
233 |
Q |
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| T |
31444761 |
atctaatctaatctaacttattcctaatcctagt |
31444794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 997810 - 997843
Alignment:
| Q |
200 |
atctaatctaatctaacttattcctaatcctagt |
233 |
Q |
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| T |
997810 |
atctaatctaatctaacttattcctaatcctagt |
997843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 11394008 - 11394041
Alignment:
| Q |
200 |
atctaatctaatctaacttattcctaatcctagt |
233 |
Q |
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| T |
11394008 |
atctaatctaatctaacttatttctaatcctagt |
11394041 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 16262741 - 16262713
Alignment:
| Q |
205 |
atctaatctaacttattcctaatcctagt |
233 |
Q |
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| T |
16262741 |
atctaatctaacttattcctaatcctagt |
16262713 |
T |
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