View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13426_low_2 (Length: 415)
Name: NF13426_low_2
Description: NF13426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13426_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 4960794 - 4961193
Alignment:
| Q |
1 |
caacggttttcaacaaggtattaaacaatggtcagaaacttgtcaacatatgaaattccatggcctataacccatttaagtgacagtttaccagccatga |
100 |
Q |
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| T |
4960794 |
caacggttttcaacaaggtattaaacaatggtcagaaacttgtcaacatatgaaattccatggcctataacccatttaagcgacggtttaccaaccctga |
4960893 |
T |
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| Q |
101 |
cctaaagttttgtttcctaaagtcaaaattggtgtagtgtgtattatgtgaattagtagtcgttaaaggttttgaagaacattaatttaaatgtcacgaa |
200 |
Q |
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| T |
4960894 |
cctaaagtttcgtttcataaagtcaaaaatggtgtagtgtgtcttatgtgaattagtggtcgttaaaggttttgaagaacattaacttaaatgtcacgaa |
4960993 |
T |
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| Q |
201 |
attggtaatacaatatctctaaaactgttatcattcgaacaactgtcatagatcacgtatcaaaagttatggttaataatcatccaacacatacatagat |
300 |
Q |
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| T |
4960994 |
attggtaatacaatatgtctaaaactattatcattcgaacaactgtcatagatcacgtataaaaaattatggctaataatcatccaacacatacatagat |
4961093 |
T |
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| Q |
301 |
ttacaaacattcataaacgcataaaaacattaagaacaagtaaatgtgacacttgtttggccgaattaaagatgacataagacaatttgattttcaactt |
400 |
Q |
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| T |
4961094 |
ttacaaacattcataaacacataaaaacattaagaacaagtaaatgtgacacttgtttggccgaattaaagatgacataagacaatttgattttcaactt |
4961193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 40649337 - 40649250
Alignment:
| Q |
252 |
atcacgtatcaaaagttatggttaataatcatccaacacatacatagatttacaaacattcataaacgcataaaaacattaagaacaa |
339 |
Q |
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| T |
40649337 |
atcatgtatcaaaatatatagttaataatcgtccaacacatacattgatttattaacattcgttaacgtataaaaacattaataacaa |
40649250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 34845798 - 34845732
Alignment:
| Q |
260 |
tcaaaagttatggttaataatcatccaacacatacatagatttacaaacattcataaacgcataaaa |
326 |
Q |
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| T |
34845798 |
tcaaaaattaaggttaataatcattcaaaacataaatcgatttatgaacattcataaatgcataaaa |
34845732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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