View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13426_low_3 (Length: 390)
Name: NF13426_low_3
Description: NF13426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13426_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 35205263 - 35205630
Alignment:
| Q |
17 |
aggaagaaggttctaactaactaattcaactgaagcaatctttgctgcataacagaagaacctaccattcccaaagtcctcttctcatcaaattcttgca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35205263 |
aggaagaaggttctaactaactaattcaactgaagcaatctttgctgcataacagaagaacctaccattcccaaagtcctcttctcatcaaattcttgca |
35205362 |
T |
|
| Q |
117 |
agacattaataagtttccgcgctttcttctccgcttgaggagtaccatcggtaagatttgcataaagcaaaggcataatccccgaagcatgcttcgccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35205363 |
agacattaataagtttccgcgctttcttctccgcttgaggagtaccatcggtaagatttgcataaagcaaaggcataatccccgaagcatgcttcgccaa |
35205462 |
T |
|
| Q |
217 |
aacactaacaacctctccaccaacattaacacatagtgaaaccaaaatggaaacacagtactccttctccgcactcgaatttgcagattgcaaaatccca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35205463 |
aacactaacaacctctccaccaacattaacacatagtgaaaccaaaatggaaacacagtactccttctccgcacgcgaatttgcagattgcaaaatccca |
35205562 |
T |
|
| Q |
317 |
ataaccaatgacaaacccgagcattctaatacagcacgagcaccatccacattctccgcctatgctac |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35205563 |
ataaccaatgacaaacccgagcattctaatacagcacgagcaccatccacattctccgccaatgctac |
35205630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University