View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13426_low_4 (Length: 343)

Name: NF13426_low_4
Description: NF13426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13426_low_4
NF13426_low_4
[»] chr1 (9 HSPs)
chr1 (12-327)||(8526843-8527158)
chr1 (201-286)||(17128498-17128583)
chr1 (203-286)||(16909037-16909120)
chr1 (212-281)||(42476339-42476408)
chr1 (246-286)||(52626564-52626604)
chr1 (247-288)||(44675154-44675195)
chr1 (201-278)||(45718346-45718423)
chr1 (214-278)||(2653732-2653796)
chr1 (246-286)||(26260809-26260849)
[»] chr7 (3 HSPs)
chr7 (201-286)||(9628212-9628297)
chr7 (205-242)||(24905112-24905149)
chr7 (217-286)||(35516721-35516790)
[»] chr4 (7 HSPs)
chr4 (201-286)||(13608949-13609034)
chr4 (211-275)||(32293650-32293714)
chr4 (246-281)||(37772970-37773005)
chr4 (201-286)||(13137093-13137178)
chr4 (247-284)||(27270009-27270046)
chr4 (213-277)||(22495377-22495441)
chr4 (214-278)||(45637456-45637520)
[»] chr5 (5 HSPs)
chr5 (201-281)||(16518393-16518473)
chr5 (202-286)||(8006788-8006872)
chr5 (201-281)||(25942621-25942701)
chr5 (205-285)||(32246913-32246993)
chr5 (205-285)||(18908558-18908638)
[»] chr2 (7 HSPs)
chr2 (212-281)||(36178888-36178957)
chr2 (213-286)||(45131127-45131200)
chr2 (205-278)||(12606878-12606951)
chr2 (246-286)||(27009256-27009296)
chr2 (208-278)||(29691133-29691203)
chr2 (201-286)||(38409000-38409085)
chr2 (246-286)||(40638804-40638844)
[»] chr6 (4 HSPs)
chr6 (202-274)||(1767083-1767155)
chr6 (214-278)||(18673390-18673454)
chr6 (199-286)||(11298593-11298680)
chr6 (201-278)||(29599177-29599254)
[»] chr8 (1 HSPs)
chr8 (220-281)||(43776250-43776311)
[»] chr3 (3 HSPs)
chr3 (201-286)||(23050128-23050213)
chr3 (212-280)||(27302371-27302439)
chr3 (201-286)||(41878705-41878790)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 8526843 - 8527158
Alignment:
Q  12 atggacatcatcttgatgcagatagaaaacgaggtatgtcacaattatcattgagattatgcttatgcggtggaccccatttatccaatgaatgccctat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8526843 atggacatcatcttgatgcagatagaaaacgaggtatgtcacaattatcattgagattatgcttatgcggtggaccccatttatccaatgaatgccctat 8526942  T
Q  112 gagagttgccagggcttgtttcctgaaaaaacaatattaaaaatttgctaaaagaaagaataagctctaatagtgatgaccattaagatgattaagtcgt 211  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8526943 gagagttgcgagagcttgtttcctgaaaaaacaatattaaaaatttgctaaaagaaagaataagctctaatagtaatgaccattaagatgattaagtcgt 8527042  T
Q  212 taactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccatttatcttttcagacattgattttgttag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  8527043 taactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattatcatggttggtgacttagtccatttaccttttcagacattggttttgttag 8527142  T
Q  312 tttctttcgtttttgt 327  Q
    ||||||||||||||||    
T  8527143 tttctttcgtttttgt 8527158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 17128498 - 17128583
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  17128498 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccattgttggtggcttagtcctttta 17128583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 16909120 - 16909037
Alignment:
Q  203 ttaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    |||||||  ||||||| |||||| |||||||||||| ||||| |||  || ||||||| | |||||||||||||||||| ||||    
T  16909120 ttaagtctctaactttgatgtggttgaaggggaaattcgtcagtctctccctcaattatcatggttggtggcttagtccgttta 16909037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 42476339 - 42476408
Alignment:
Q  212 taactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtcc 281  Q
    |||||| || |||| ||||||||||| |||||| ||||||| ||||||| | |||||||||||| |||||    
T  42476339 taacttacaggtggttgaaggggaaacacgtcagtcttcccctcaattatcatggttggtggctaagtcc 42476408  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 52626564 - 52626604
Alignment:
Q  246 tcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  52626564 tcttcccttcaattatcatggttggtggcttagtccattta 52626604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 44675154 - 44675195
Alignment:
Q  247 cttcccttcaattaccgtggttggtggcttagtccatttatc 288  Q
    |||||||||||||| | |||||||||||||||||| ||||||    
T  44675154 cttcccttcaattatcatggttggtggcttagtccgtttatc 44675195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 45718346 - 45718423
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttag 278  Q
    |||||||| ||||||||| | ||||||||||  |||||  | || ||||||||| ||||| | |||||||||||||||    
T  45718346 gattaagttgttaactttgaagtggctgaagatgaaatttgccactcttccctttaattatcatggttggtggcttag 45718423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 2653796 - 2653732
Alignment:
Q  214 actttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttag 278  Q
    ||||||| |||| ||||||||||| | |||| | ||||| ||||||| | |||||||||||||||    
T  2653796 actttcacgtggttgaaggggaaacatgtcagtattcccctcaattaacatggttggtggcttag 2653732  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 26260809 - 26260849
Alignment:
Q  246 tcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||||||| | ||| |||||||||||||||||||    
T  26260809 tcttcccttcaattatcatgggtggtggcttagtccattta 26260849  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 9628212 - 9628297
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  9628212 gattaagtcgacaactttcatgtggttgaaagggaaatacgtcaatcttcccttcaattaccatggttggtggcttagtccgttta 9628297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 24905149 - 24905112
Alignment:
Q  205 aagtcgttaactttcatgtggctgaaggggaaatacgt 242  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  24905149 aagtcgttaactttcatgtggttgaaggggaaatacgt 24905112  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 35516721 - 35516790
Alignment:
Q  217 ttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    |||| |||| ||||||||||| |||| | ||||||||| ||||    |||||||||||||||||||||||    
T  35516721 ttcacgtggttgaaggggaaacacgttagtcttcccttaaatttttatggttggtggcttagtccattta 35516790  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 13609034 - 13608949
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  13609034 gattaagtcgacaactttcatgtggttgaaagggaaatacgtcaatcttcccttcaattaccatggttggtggcttagtccgttta 13608949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 32293714 - 32293650
Alignment:
Q  211 ttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggct 275  Q
    ||||||||||||||| |||||||||||| ||||  || ||||||||| |||| ||||||||||||    
T  32293714 ttaactttcatgtggttgaaggggaaattcgtcggtcctcccttcaaataccatggttggtggct 32293650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 37772970 - 37773005
Alignment:
Q  246 tcttcccttcaattaccgtggttggtggcttagtcc 281  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37772970 tcttcccttcaattaccatggttggtggcttagtcc 37773005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 13137093 - 13137178
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||||||||| || |||| |||||| |||||  |  | ||||  ||||||||| | |||||||||||||||||| ||||    
T  13137093 gattaagtcgttaacttacaggtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgttta 13137178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 27270046 - 27270009
Alignment:
Q  247 cttcccttcaattaccgtggttggtggcttagtccatt 284  Q
    |||||||||||||| | |||||||||||||||||||||    
T  27270046 cttcccttcaattatcatggttggtggcttagtccatt 27270009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 22495441 - 22495377
Alignment:
Q  213 aactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggctta 277  Q
    ||||||||||||| |||| | |||||| | ||||||  | |||||||||| ||||||||||||||    
T  22495441 aactttcatgtggttgaaagagaaatatgccaatctatctttcaattaccatggttggtggctta 22495377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 45637456 - 45637520
Alignment:
Q  214 actttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttag 278  Q
    ||||||| |||| ||||||||||| | |||| | ||||| ||||||| | |||||||||||||||    
T  45637456 actttcacgtggttgaaggggaaacatgtcagtattcccctcaattaacatggttggtggcttag 45637520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 16518473 - 16518393
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtcc 281  Q
    ||||||||||  |||||| |||||| |||||||||||||  ||||||||||| ||||||||| ||||| ||||||||||||    
T  16518473 gattaagtcggcaacttttatgtggttgaaggggaaatatatcaatcttcccctcaattaccatggttagtggcttagtcc 16518393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 8006788 - 8006872
Alignment:
Q  202 attaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    |||||||| |||| |||||||||  | |||| ||||| ||||| ||||||||||||||| | |||||||||||| ||||||||||    
T  8006788 attaagtcattaattttcatgtgatttaaggagaaattcgtcagtcttcccttcaattatcatggttggtggctcagtccattta 8006872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 25942701 - 25942621
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtcc 281  Q
    ||||||||||  ||||||||| ||| |||| | |||||||| ||||||||| ||||||||   ||||||||||||||||||    
T  25942701 gattaagtcgacaactttcatatggttgaaagagaaatacgccaatcttccgttcaattattatggttggtggcttagtcc 25942621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 32246913 - 32246993
Alignment:
Q  205 aagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattt 285  Q
    |||||||||||||||| |||| |||||||||||||||| | ||| |||| ||| || | ||||||||||| ||| ||||||    
T  32246913 aagtcgttaactttcaagtggttgaaggggaaatacgtaactctcccctccaactatcttggttggtggcatagcccattt 32246993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 18908638 - 18908558
Alignment:
Q  205 aagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattt 285  Q
    |||||||  ||||| | |||| |||| || ||||| || | |||||||| ||| |||| ||||||||||||||||||||||    
T  18908638 aagtcgtcgacttttacgtggttgaaaggaaaatatgttactcttccctccaactaccatggttggtggcttagtccattt 18908558  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 36178888 - 36178957
Alignment:
Q  212 taactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtcc 281  Q
    |||| ||||||||| ||||||||||| | |||| ||||||| ||||||||| |||||||||||| |||||    
T  36178888 taaccttcatgtggttgaaggggaaacatgtcagtcttcccctcaattaccatggttggtggctaagtcc 36178957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 45131200 - 45131127
Alignment:
Q  213 aactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||||| ||||||||||||| |    ||||||||||||||| | ||| |||||||||||||||||||    
T  45131200 aactttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccattta 45131127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 12606878 - 12606951
Alignment:
Q  205 aagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttag 278  Q
    |||||| |||||||||||||| |||||||||||||||| | |||||| |  || || | |||||||||||||||    
T  12606878 aagtcgctaactttcatgtggttgaaggggaaatacgttagtcttccttcgaactatcatggttggtggcttag 12606951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 27009256 - 27009296
Alignment:
Q  246 tcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  27009256 tcttcccttcaattaccatggttggtggcttagtccgttta 27009296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 29691133 - 29691203
Alignment:
Q  208 tcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttag 278  Q
    |||||||||| ||||| | |||||||||||||||| | ||| |||| ||| || | |||||||||||||||    
T  29691133 tcgttaacttacatgtagttgaaggggaaatacgttagtctcccctccaactatcatggttggtggcttag 29691203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 38409000 - 38409085
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||||||||| ||||| | |||||| ||||| ||  |  |||||||||||||| | |||||||||| | ||||| ||||    
T  38409000 gattaagtcgttaacttacatgtagttgaaggtgaaattcgctacacttcccttcaattatcatggttggtggttcagtccgttta 38409085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 40638844 - 40638804
Alignment:
Q  246 tcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||||||||||| ||| |||||||||||||| ||||    
T  40638844 tcttcccttcaattaccatgggtggtggcttagtccgttta 40638804  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 1767083 - 1767155
Alignment:
Q  202 attaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggc 274  Q
    |||||| || |||||||||||||| ||||||||||||  |||| ||||||  ||||||||| |||||||||||    
T  1767083 attaaggcgctaactttcatgtggttgaaggggaaatttgtcagtcttcctctcaattaccatggttggtggc 1767155  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 18673390 - 18673454
Alignment:
Q  214 actttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttag 278  Q
    ||||| |||||| |||||| |||||| |||| ||||||| ||||||| | |||||||||||||||    
T  18673390 acttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttag 18673454  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 11298680 - 11298593
Alignment:
Q  199 atgattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    |||||||||| |||||||||   |||| |||||| ||| |  |||| ||||||||| || || | |||||||||||||||||||||||    
T  11298680 atgattaagttgttaacttttcagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccattta 11298593  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 29599254 - 29599177
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttag 278  Q
    |||||||||  || || |||||||| |||||| ||||||||    ||||||||||||||||  |||||||||||||||    
T  29599254 gattaagtctgtagctgtcatgtggttgaaggtgaaatacgcttctcttcccttcaattactatggttggtggcttag 29599177  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 43776250 - 43776311
Alignment:
Q  220 atgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtcc 281  Q
    |||||| |||||||||||||||||| ||| ||| ||||||| | ||||||||||||| ||||    
T  43776250 atgtggttgaaggggaaatacgtcagtctacccctcaattatcatggttggtggctttgtcc 43776311  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 23050128 - 23050213
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    ||||||||| |  ||||||| |||| ||||||||||| |||  | ||||||||| || | || |||||||||||||||||||||||    
T  23050128 gattaagtcatcgactttcacgtggttgaaggggaaacacgctagtcttcccttaaactcccatggttggtggcttagtccattta 23050213  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 27302371 - 27302439
Alignment:
Q  212 taactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtc 280  Q
    |||||| ||||||| ||||||||||| |||| | ||||||| ||||||| | |||||||||||| ||||    
T  27302371 taacttacatgtggttgaaggggaaacacgttagtcttcccctcaattatcatggttggtggctaagtc 27302439  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 41878705 - 41878790
Alignment:
Q  201 gattaagtcgttaactttcatgtggctgaaggggaaatacgtcaatcttcccttcaattaccgtggttggtggcttagtccattta 286  Q
    |||||||| | ||||||||  |||| |||||| ||| |  |||| ||||||||| || || | |||||||||||||||||||||||    
T  41878705 gattaagttgctaactttccagtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtccattta 41878790  T

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