View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_13 (Length: 397)
Name: NF13427_high_13
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_13 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 382
Target Start/End: Complemental strand, 23348738 - 23348362
Alignment:
| Q |
6 |
agggaaagggaaagagcttatggaacctcaaaattcaggatccgaattaacatagcttattgaagattatgttaagcttgttcaaatgattcatcaaggt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23348738 |
agggaaagggaaagagcttatggaacctcaaaattcaggatccgaattaacataacttattgaagattatgttaagcttgttcaaatgattcatcaaggt |
23348639 |
T |
|
| Q |
106 |
ctattgaaaagagctggtgtgaaaaatgaagctgtaaaaaatggcaaggaagctgtagataatcattggtagtcaaagatttgacattattctcgtggat |
205 |
Q |
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| T |
23348638 |
ctattgaaaagagctggtgtgaaaaatgaagctgtaaaaaatggcaaggaagctgtagataatcattggtagtcaaagatttgacattattctcgtggat |
23348539 |
T |
|
| Q |
206 |
aaggaaatgcctatcatgtatgggattgaggtacatatttatcttgattctgttttccttctaannnnnnnctgtataatacgtttaaaagaaggttgaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
23348538 |
aaggaaatgcctatcatgtatgggattgaggtacatatttatcttgattctgttttccttctaatttttttctgtataatacgttgaaaagaaggttgaa |
23348439 |
T |
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| Q |
306 |
aatgcatgtttcatgtgcttaattcgattcttgatgtcgtaaaagttggcaagtagcatgtccttcgtgaatgatgt |
382 |
Q |
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| T |
23348438 |
aatacatgtttcatgtgcttaattcgattcttgatgtcgtaaaagttggcaagtagcatgtccttcgtgaatgatgt |
23348362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 160111 - 160429
Alignment:
| Q |
6 |
agggaaagggaaagagcttatggaacctcaaaattcaggatccgaattaacatagcttattgaagattatgttaagcttgttcaaatgattcatcaaggt |
105 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||| ||| | |||||||||| |
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| T |
160111 |
agggaaagggtaagggcttatggaacctcaaaattcaggatccgaattaacaacacttattgtagatgatattaagcttgttcgaattagtcatcaaggt |
160210 |
T |
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| Q |
106 |
ctattgaaaagagctggtgtgaaaaatgaagctgtaaaaaatggcaaggaagctgtagataatcatt--ggtagtcaaagatttgacattattctcgtgg |
203 |
Q |
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| T |
160211 |
ctattgaaaagagctggtgtgaaaaatgaagctgtaaaaaatggtaaggaagttgtaggtattcattccagtggtaaaagatttgacattactctcgtgg |
160310 |
T |
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| Q |
204 |
ataaggaaatgcctatcatgtatgggattgaggtacatatttatcttgattctgttttccttctaannnnnnnctgtataatacgtttaaaagaaggttg |
303 |
Q |
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| T |
160311 |
ataaggaaattcctatcatgaataggattgaggtacatatttatcttgattatgttttccttctaattttgttatgtataatacgttgaaaagaaggatg |
160410 |
T |
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| Q |
304 |
aaaatgcatgtttcatgtg |
322 |
Q |
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||||||||||||||||||| |
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| T |
160411 |
aaaatgcatgtttcatgtg |
160429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 160615 - 160674
Alignment:
| Q |
323 |
cttaattcgattcttgatgtcgtaaaagttggcaagtagcatgtccttcgtgaatgatgt |
382 |
Q |
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| T |
160615 |
cttaattcgattcttgatgtcgtaaaagctggcaaatagtatgtcctttgtgaatgatgt |
160674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 39636140 - 39635897
Alignment:
| Q |
6 |
agggaaagggaaagagcttatggaacctcaaaattcaggatccgaattaacatagcttattgaagattatgttaagcttgttcaaatgattcatcaaggt |
105 |
Q |
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|||||||||||||| | | |||||| ||||| |||||||| | ||||||||| ||||||| |||| ||| ||||||||||| |||||||||||||||| |
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| T |
39636140 |
agggaaagggaaagggataatggaatctcaagattcaggaactgaattaacagcacttattgtagatgatgataagcttgttcgaatgattcatcaaggt |
39636041 |
T |
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| Q |
106 |
ctattgaaaagagctggtgtgaaaaatgaagctgtaaaaaatggcaaggaagctgtagataatcattg--gtagtcaaagatttgacattattctcgtgg |
203 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||| | ||||||||||||| ||||||||| ||| |
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| T |
39636040 |
ctattgaaaagagctggtgtgaaaagtgaagctgtaaaaaatggtaaagaagctgtagatatccattgcaatggtcaaagatttgatattattctcatgg |
39635941 |
T |
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| Q |
204 |
ataaggaaatgcctatcatgtatgggattgaggtacatatttat |
247 |
Q |
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| T |
39635940 |
ataaggaaatgcctatcatgaatgggattgaggtacatagttat |
39635897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 33841187 - 33841057
Alignment:
| Q |
6 |
agggaaagggaaagagcttatggaacctcaaaattcaggatccgaattaacatagcttattgaagattatgttaagcttgttcaaatgattcatcaaggt |
105 |
Q |
| |
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|||||||||||||| || ||||||||||||||| ||| | |||||||||| |||| || ||| ||| ||||||||| |||||||||||||||| |
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| T |
33841187 |
agggaaagggaaag-gcaaatggaacctcaaaatccagccttcgaattaacaagacttaatgtagaagatgataagcttgtctgaatgattcatcaaggt |
33841089 |
T |
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| Q |
106 |
ctattgaaaagagctggtgtgaaaaatgaagc |
137 |
Q |
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||||| ||||||| | || ||||| ||||||| |
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| T |
33841088 |
ctattaaaaagagttagtatgaaagatgaagc |
33841057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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