View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13427_high_19 (Length: 308)
Name: NF13427_high_19
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 24727366 - 24727653
Alignment:
| Q |
13 |
gacatcatcacgatataaactcgtgtacgagtatctcatgttggaacactagtaagctatagtggaaagttggaaagaataaacaccttagtaagaataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24727366 |
gacatcatcacgatataaactcgtgtacaagtatctcatgttggaacactagtaagttatagtggaaagttggaaagaataaacaccttagtaagaataa |
24727465 |
T |
|
| Q |
113 |
cccaacaatttgaaacaaacgatgcttggtcatcaagtataacattcactttaataatcttgtttttactttgagttgagcttattttttgttaccgttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24727466 |
cccaacaatttgaaacaaacgatgcttggtcatcaagtataacattcactttaataatcttgtttttactttgagttgagcttattttttgttaccgttt |
24727565 |
T |
|
| Q |
213 |
ctatctctttctatgatttgaatttataatgtttcacatttttgttgaataatgagaaaaagtggaaacagaatataattgaataata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24727566 |
ctatctctttctatgatttgaatttataatgtttcacatttttgttgaataatgagaaaaggtggaaacagaatataattgaataata |
24727653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 42419827 - 42419767
Alignment:
| Q |
169 |
atcttgtttttactttgagttgagcttattttttgttaccgtttctatctctttctatgat |
229 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
42419827 |
atcttgtttttattttgagttgagcttatttgttgttatcgttggtatctctttctatgat |
42419767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 31987547 - 31987490
Alignment:
| Q |
51 |
tgttggaacactagtaagctatagtggaaagttggaaagaataaacaccttagtaaga |
108 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||| |||||||||||||||| |||||| |
|
|
| T |
31987547 |
tgttggaacactagcaagttacagtggaaagttgaaaagaataaacaccttggtaaga |
31987490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 34253728 - 34253775
Alignment:
| Q |
51 |
tgttggaacactagtaagctatagtggaaagttggaaagaataaacac |
98 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
34253728 |
tgttggaacactagcaatttatagtggaaagtttgaaagaataaacac |
34253775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 26379248 - 26379283
Alignment:
| Q |
73 |
agtggaaagttggaaagaataaacaccttagtaaga |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26379248 |
agtggaaagttggatagaataaacaccttagtaaga |
26379283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 14725099 - 14725041
Alignment:
| Q |
51 |
tgttggaacactagtaagctatagtggaaa-gttggaaagaataaacaccttagtaaga |
108 |
Q |
| |
|
|||||||||||||| ||| || ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
14725099 |
tgttggaacactagcaagataatgtggaaaagttggaaagaataaacaccttggtaaga |
14725041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 20731808 - 20731768
Alignment:
| Q |
260 |
aataatgagaaaaagtggaaacagaatataattgaataata |
300 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
20731808 |
aataatgagaaaaagtggaaagagaaaatagttgaataata |
20731768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 27557263 - 27557206
Alignment:
| Q |
51 |
tgttggaacactagtaagctatagtggaaa-gttggaaagaataaacaccttagtaaga |
108 |
Q |
| |
|
||||||||| ||||||| | |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
27557263 |
tgttggaactctagtaa-caatagtggaaaagttggatagaataaacaccttagtaaga |
27557206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University