View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_21 (Length: 301)
Name: NF13427_high_21
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 29339713 - 29339425
Alignment:
| Q |
1 |
attgggaaataaatgttagttacattaatatttgtttaagttgtttgcttgcaagatttgtttaagtcaagtttgtaccatataatccatacacgaagaa |
100 |
Q |
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| T |
29339713 |
attgggaaataaatgtta----cattaatatttgtttaagttgtttgtttgcaagatttgtttaagtcaagtttgtaccatataatccatacacgaagat |
29339618 |
T |
|
| Q |
101 |
ttagtctctgcgattgtgtgaagataatactttnnnnnnnnnnnnnnnncacatttcaacaatttgttattaattattttggcaggagtatagtatattt |
200 |
Q |
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|||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339617 |
ttagtctctgtgattgtgtgaagatgatactttaaaaaactaaaaaaaacacatttcaacaatttgttattaattattttggcaggagtatagtatattt |
29339518 |
T |
|
| Q |
201 |
atggatccatctcacttaggttagatagtgacatattgtcggaggtgagatgtgagagaccgatgatcttcttaatgtatgattgtgatgatg |
293 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29339517 |
atggatccatctcacttaggttagatattgacatattgtcggaggtgagatgtgagaggccgatgatcttcttaatgtatgattgtgatgatg |
29339425 |
T |
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