View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_22 (Length: 284)
Name: NF13427_high_22
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 35020399 - 35020142
Alignment:
| Q |
17 |
atcagcatcacgaccatctaaatcttcatcaatggtggaaagcagcacatccatgaaatcttgttcacgaccagaattcttgttacgtttgtgttgatca |
116 |
Q |
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| T |
35020399 |
atcagcatcacggccatctaaatcttcatcaacggttgaaagcagcacatccatgaaatcttgttcacgaccagaattcttcttatgtttgtgctgatca |
35020300 |
T |
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| Q |
117 |
agccaaacacaaacaaactcatccatttcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaatacggtaacgtgtcag |
216 |
Q |
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| T |
35020299 |
agccaaacacaaacaaagtcatctaactcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaatacggtaacatgtcag |
35020200 |
T |
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| Q |
217 |
aaacaacaaatgaaccactaagatcnnnnnnntctctaatcatttttcttatcctttg |
274 |
Q |
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| T |
35020199 |
aaacaacaaatgaaccactaagattaaaaaaatctctaatcatttttcttatcctttg |
35020142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 35036522 - 35036374
Alignment:
| Q |
93 |
ttcttgttacgtttgtgttgatcaagccaaacacaaacaaactcatccatttcttttgctgttttcttcatttgcttctgttttccatccaaatccaacc |
192 |
Q |
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| T |
35036522 |
ttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaacc |
35036423 |
T |
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| Q |
193 |
atctcaaatacggtaacgtgtcagaaacaacaaatgaaccactaagatc |
241 |
Q |
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| T |
35036422 |
atctaaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatc |
35036374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 240
Target Start/End: Complemental strand, 35044646 - 35044506
Alignment:
| Q |
100 |
tacgtttgtgttgatcaagccaaacacaaacaaactcatccatttcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaa |
199 |
Q |
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| T |
35044646 |
tacgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaa |
35044547 |
T |
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| Q |
200 |
atacggtaacgtgtcagaaacaacaaatgaaccactaagat |
240 |
Q |
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| T |
35044546 |
aaacggcaacgaatcagatataacaaaggaaccacaaagat |
35044506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 35030299 - 35030251
Alignment:
| Q |
23 |
atcacgaccatctaaatcttcatcaatggtggaaagcagcacatccatg |
71 |
Q |
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| T |
35030299 |
atcacgaacatctaaatcttcatcaatggtggaaagcagcacatccatg |
35030251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 35036603 - 35036545
Alignment:
| Q |
18 |
tcagcatcacgaccatctaaatct---tcatcaatggtggaaagcagcacatccatgaa |
73 |
Q |
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| T |
35036603 |
tcagcatcacgaccatctatatcttgatcatcaacggttgaaaggagcacatccatgaa |
35036545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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