View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13427_high_23 (Length: 281)

Name: NF13427_high_23
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13427_high_23
NF13427_high_23
[»] chr1 (41 HSPs)
chr1 (43-254)||(40812473-40812682)
chr1 (43-172)||(2971825-2971954)
chr1 (181-268)||(36509842-36509929)
chr1 (181-268)||(36511329-36511416)
chr1 (63-158)||(35684084-35684179)
chr1 (57-163)||(21278093-21278199)
chr1 (63-146)||(34531815-34531898)
chr1 (181-268)||(40811226-40811313)
chr1 (63-158)||(48973338-48973433)
chr1 (193-254)||(26054942-26055003)
chr1 (63-151)||(25889374-25889462)
chr1 (181-268)||(19464631-19464718)
chr1 (181-268)||(19466203-19466290)
chr1 (193-267)||(22167811-22167885)
chr1 (218-268)||(40110687-40110737)
chr1 (181-255)||(49141494-49141568)
chr1 (181-254)||(3979311-3979384)
chr1 (181-261)||(14764267-14764347)
chr1 (182-254)||(47560184-47560256)
chr1 (196-268)||(51726857-51726929)
chr1 (193-268)||(8092629-8092704)
chr1 (181-268)||(14765092-14765179)
chr1 (101-249)||(16217490-16217636)
chr1 (63-254)||(48934991-48935181)
chr1 (218-268)||(26803251-26803301)
chr1 (43-165)||(38283600-38283721)
chr1 (218-268)||(40109392-40109442)
chr1 (181-255)||(47411028-47411102)
chr1 (101-150)||(25786115-25786164)
chr1 (181-254)||(26056145-26056218)
chr1 (182-250)||(3978093-3978161)
chr1 (193-268)||(14169650-14169725)
chr1 (225-268)||(24516365-24516408)
chr1 (181-255)||(16218476-16218550)
chr1 (218-268)||(24517649-24517699)
chr1 (181-254)||(49139846-49139919)
chr1 (101-146)||(52181225-52181270)
chr1 (182-254)||(9592283-9592355)
chr1 (193-249)||(14071213-14071269)
chr1 (181-249)||(14390308-14390376)
chr1 (106-150)||(25787089-25787133)
[»] chr6 (11 HSPs)
chr6 (57-172)||(16269493-16269608)
chr6 (43-164)||(14326267-14326394)
chr6 (43-164)||(14419277-14419404)
chr6 (182-268)||(14328773-14328859)
chr6 (182-268)||(14421783-14421869)
chr6 (99-171)||(16251381-16251453)
chr6 (182-254)||(33807734-33807806)
chr6 (201-268)||(14326184-14326251)
chr6 (201-268)||(14419194-14419261)
chr6 (218-268)||(13800062-13800112)
chr6 (181-254)||(31738408-31738481)
[»] chr3 (33 HSPs)
chr3 (57-268)||(48866172-48866382)
chr3 (43-154)||(12060782-12060893)
chr3 (101-254)||(51825541-51825692)
chr3 (193-268)||(35173178-35173253)
chr3 (57-159)||(49334213-49334315)
chr3 (203-268)||(43346467-43346532)
chr3 (43-164)||(23561001-23561128)
chr3 (181-268)||(23559850-23559937)
chr3 (181-254)||(54653964-54654037)
chr3 (184-268)||(21127956-21128040)
chr3 (63-141)||(39287606-39287684)
chr3 (193-254)||(35174392-35174453)
chr3 (63-172)||(47854612-47854721)
chr3 (181-249)||(7820440-7820508)
chr3 (193-268)||(12060689-12060764)
chr3 (181-268)||(43345350-43345437)
chr3 (63-158)||(48825952-48826047)
chr3 (63-158)||(52293404-52293499)
chr3 (193-249)||(36626781-36626837)
chr3 (101-252)||(47808027-47808175)
chr3 (193-268)||(12062394-12062469)
chr3 (201-268)||(23561143-23561210)
chr3 (225-267)||(33000842-33000884)
chr3 (225-267)||(39531858-39531900)
chr3 (181-254)||(8371265-8371338)
chr3 (181-254)||(11219475-11219548)
chr3 (193-254)||(11220668-11220729)
chr3 (181-254)||(32980450-32980523)
chr3 (106-151)||(42632852-42632897)
chr3 (181-249)||(25585831-25585899)
chr3 (182-254)||(41386175-41386247)
chr3 (220-268)||(48867467-48867515)
chr3 (181-249)||(53808368-53808436)
[»] chr2 (22 HSPs)
chr2 (43-164)||(14510390-14510511)
chr2 (63-158)||(33836909-33837004)
chr2 (63-255)||(2305584-2305775)
chr2 (58-162)||(42246726-42246830)
chr2 (63-158)||(41312640-41312735)
chr2 (182-268)||(14509240-14509326)
chr2 (181-254)||(12852931-12853004)
chr2 (196-268)||(7983708-7983780)
chr2 (188-268)||(14510514-14510594)
chr2 (63-158)||(3665364-3665459)
chr2 (183-254)||(7037011-7037082)
chr2 (181-240)||(40174762-40174821)
chr2 (181-255)||(21012078-21012152)
chr2 (218-268)||(25570905-25570955)
chr2 (210-259)||(35801072-35801121)
chr2 (225-268)||(7982343-7982386)
chr2 (225-267)||(20630713-20630755)
chr2 (201-254)||(3533644-3533697)
chr2 (193-254)||(6706971-6707032)
chr2 (181-254)||(15650486-15650559)
chr2 (193-254)||(29424622-29424683)
chr2 (202-254)||(32614430-32614482)
[»] chr7 (28 HSPs)
chr7 (44-172)||(33458435-33458563)
chr7 (196-268)||(4167482-4167554)
chr7 (63-151)||(30223858-30223946)
chr7 (196-268)||(35315235-35315307)
chr7 (101-249)||(22060513-22060659)
chr7 (63-249)||(43936022-43936206)
chr7 (63-151)||(30222792-30222880)
chr7 (101-172)||(35128112-35128182)
chr7 (196-268)||(10257401-10257471)
chr7 (63-152)||(41126385-41126474)
chr7 (181-249)||(7148056-7148124)
chr7 (63-157)||(36673717-36673811)
chr7 (181-249)||(14206723-14206791)
chr7 (181-249)||(14215413-14215481)
chr7 (63-143)||(41618380-41618460)
chr7 (225-268)||(4168891-4168934)
chr7 (193-268)||(10256154-10256229)
chr7 (101-172)||(22061715-22061785)
chr7 (101-249)||(43007569-43007715)
chr7 (218-268)||(132034-132084)
chr7 (225-255)||(13287036-13287066)
chr7 (193-254)||(19279622-19279683)
chr7 (193-254)||(38406063-38406124)
chr7 (181-254)||(43006430-43006503)
chr7 (182-255)||(46674933-46675006)
chr7 (63-172)||(47163278-47163386)
chr7 (225-266)||(47537082-47537123)
chr7 (182-254)||(22744791-22744863)
[»] chr8 (22 HSPs)
chr8 (43-146)||(8096426-8096529)
chr8 (57-254)||(36071252-36071449)
chr8 (193-268)||(8095377-8095452)
chr8 (193-268)||(20308636-20308711)
chr8 (193-268)||(21095269-21095344)
chr8 (181-254)||(13367048-13367121)
chr8 (182-255)||(36940032-36940105)
chr8 (196-268)||(41522701-41522773)
chr8 (218-268)||(22619926-22619976)
chr8 (218-268)||(22621169-22621219)
chr8 (193-255)||(24069456-24069518)
chr8 (101-254)||(31623951-31624102)
chr8 (181-254)||(36756109-36756182)
chr8 (181-250)||(39220728-39220797)
chr8 (181-241)||(39546675-39546735)
chr8 (193-263)||(2421303-2421373)
chr8 (181-255)||(7486121-7486195)
chr8 (225-267)||(9190484-9190526)
chr8 (218-268)||(34616160-34616210)
chr8 (181-255)||(41866938-41867012)
chr8 (181-238)||(117109-117166)
chr8 (101-150)||(38589967-38590016)
[»] chr5 (22 HSPs)
chr5 (43-255)||(40059187-40059400)
chr5 (193-268)||(22819559-22819634)
chr5 (182-268)||(12830937-12831023)
chr5 (182-268)||(12862917-12863003)
chr5 (181-268)||(15857616-15857703)
chr5 (181-255)||(40058062-40058136)
chr5 (181-268)||(32734163-32734249)
chr5 (181-268)||(42510145-42510232)
chr5 (58-172)||(26911284-26911398)
chr5 (63-144)||(20988844-20988925)
chr5 (193-255)||(18678020-18678082)
chr5 (124-249)||(15614902-15615026)
chr5 (183-268)||(42511666-42511751)
chr5 (196-268)||(7426672-7426744)
chr5 (225-267)||(11907203-11907245)
chr5 (225-267)||(39135690-39135732)
chr5 (183-249)||(42979498-42979564)
chr5 (63-128)||(15510145-15510210)
chr5 (181-230)||(22819515-22819564)
chr5 (193-254)||(27894033-27894094)
chr5 (193-254)||(38471334-38471395)
chr5 (193-245)||(2167524-2167576)
[»] scaffold0178 (1 HSPs)
scaffold0178 (58-254)||(2141-2336)
[»] chr4 (38 HSPs)
chr4 (57-160)||(40146508-40146611)
chr4 (181-268)||(44159116-44159203)
chr4 (193-267)||(17319074-17319148)
chr4 (101-254)||(5688557-5688708)
chr4 (196-268)||(50531769-50531841)
chr4 (181-268)||(34439658-34439745)
chr4 (181-268)||(38417584-38417671)
chr4 (181-268)||(38419015-38419102)
chr4 (101-254)||(1273353-1273504)
chr4 (63-151)||(29833518-29833606)
chr4 (63-158)||(30671946-30672041)
chr4 (193-268)||(34438437-34438512)
chr4 (181-234)||(6140358-6140411)
chr4 (182-254)||(5687220-5687292)
chr4 (63-151)||(29834314-29834402)
chr4 (181-249)||(35787846-35787914)
chr4 (205-268)||(43419397-43419460)
chr4 (193-268)||(50530534-50530609)
chr4 (63-145)||(526600-526682)
chr4 (218-268)||(41348270-41348320)
chr4 (181-234)||(86868-86921)
chr4 (181-254)||(11113787-11113860)
chr4 (202-255)||(26393146-26393199)
chr4 (58-252)||(48206207-48206399)
chr4 (73-152)||(4373522-4373602)
chr4 (62-130)||(23153142-23153210)
chr4 (181-241)||(38370340-38370400)
chr4 (68-151)||(47606486-47606570)
chr4 (63-158)||(936357-936452)
chr4 (181-268)||(6139028-6139115)
chr4 (63-241)||(15446548-15446728)
chr4 (101-152)||(55953772-55953823)
chr4 (225-267)||(11482828-11482870)
chr4 (218-268)||(41349560-41349610)
chr4 (226-268)||(43418064-43418106)
chr4 (225-267)||(47242984-47243026)
chr4 (181-254)||(11114978-11115051)
chr4 (193-254)||(55952870-55952931)
[»] scaffold0098 (1 HSPs)
scaffold0098 (193-268)||(42356-42431)
[»] scaffold0177 (1 HSPs)
scaffold0177 (63-151)||(1901-1989)
[»] scaffold0045 (1 HSPs)
scaffold0045 (182-249)||(77180-77247)
[»] scaffold1974 (1 HSPs)
scaffold1974 (181-254)||(626-699)
[»] scaffold1878 (1 HSPs)
scaffold1878 (181-254)||(575-648)
[»] scaffold0369 (1 HSPs)
scaffold0369 (181-254)||(12955-13028)
[»] scaffold0290 (1 HSPs)
scaffold0290 (181-254)||(9476-9549)
[»] scaffold0122 (1 HSPs)
scaffold0122 (196-268)||(17173-17245)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 254
Target Start/End: Original strand, 40812473 - 40812682
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaat 142  Q
    |||||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||| |||||| |    
T  40812473 tttttatttgtagaaaattcaatagaaatgattctatgttgtgagttcattgtatatttgtgtgctttctaaatccaacaattgatcacca-tcttaact 40812571  T
Q  143 gacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacactta 242  Q
    |||| ||||| ||  ||||||| |||||||        ||||| || |  ||||||| |||||| | ||||| ||||||  ||||||||||| |||||||    
T  40812572 gacatgtggacaaaaggttaacggtttttg-aaaaaaactaacagaaaagaccaaaatagtaaatggcagaagagttatataaccaaattgagacactta 40812670  T
Q  243 atagttaaggga 254  Q
    ||||||||||||    
T  40812671 atagttaaggga 40812682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 2971954 - 2971825
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaat 142  Q
    |||| |||| || |||||||||||||||| || |||||||||| |||||||  ||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  2971954 ttttaatttttagaaaattcaatagaaataatcatatgttgtgagttcattttatatttgtgtgctttctaaatccagcccttgatcgccaatcttaaat 2971855  T
Q  143 gacacgtggataaggggttaacagtttttg 172  Q
    |||||||||| |||||||||||| ||||||    
T  2971854 gacacgtggacaaggggttaacaatttttg 2971825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 36509929 - 36509842
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||  ||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  36509929 ctaacggagagaaccaaaatagtaaacggcagaagatttatggaaccaaattgaaacactttatagttaagggaccaaactgagaaaa 36509842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 36511329 - 36511416
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||| ||||||| |||||||||||||| | |||||| |||||||||| |||||| ||||||||||||  ||||||||||||    
T  36511329 ctaacggagatgaccaaaatagtaaacgacagaagatttatgggaccaaattgagacactttatagttaagggaccaaactgagaaaa 36511416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 35684084 - 35684179
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| | |||||| ||| |||||| |||| |||||| |||| |||||| ||| |||||||||||| ||||| |||||    
T  35684084 aatagaaatgattatatgttgtgagctcattgtatacttgtgtactttttaaatctagcccttgatctccaatcttaaatgacatgtggacaaggg 35684179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 21278093 - 21278199
Alignment:
Q  57 aaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataag 156  Q
    ||||| ||||||||| || | |||||||| ||| |||| ||||||||| ||  ||||||| ||| | |||||||||| |||||||||||||||||||||     
T  21278093 aaatttaatagaaataatcacatgttgtgagtttattgtatatttgtgcgccctctaaattcagtctttgatcaccaatcttaaatgacacgtggataaa 21278192  T
Q  157 gggttaa 163  Q
    |||||||    
T  21278193 gggttaa 21278199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 34531898 - 34531815
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgaca 146  Q
    ||||||||||||||||||||||| |  ||||| |||||||||| ||||  ||||| |||| |||||||||| ||||||||||||    
T  34531898 aatagaaatgattatatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgaca 34531815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 40811313 - 40811226
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||| ||||||| | |||||| || || |||||||| | |||||||| ||| |||||||||||||||| ||||||||||||    
T  40811313 ctaacggagatgaccaaaataataaacggcaaaagagttatgggatcaaattgagacatttaatagttaagggatcaaactgagaaaa 40811226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 48973433 - 48973338
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| |  ||||| ||| |||||| ||||  ||||| |||| |||||||||| |||||||||||| ||||| |||||    
T  48973433 aatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggacaaggg 48973338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 26055003 - 26054942
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||| ||||    
T  26055003 accaaaatagtaaacgacagaagatttatggaaccaaattgaaacactttatagttagggga 26054942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 25889374 - 25889462
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    ||||||||||||||||||||||| || ||||| ||| ||||||  |||  ||||| |||| |||||||||| |||||||||||| ||||    
T  25889374 aatagaaatgattatatgttgtgagtccattgtatacttgtgtatttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 25889462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 19464718 - 19464631
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| |||||| ||||||| |||||||| ||||| | || ||||||||||||||||||||| ||| ||||||||  ||||||| ||||    
T  19464718 ctaatggagatgaccaaaatagtaaacggcagaagatttgtggaaccaaattgaaacactttataattaagggaccaaactgaaaaaa 19464631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 19466203 - 19466290
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||  |||| || |||||||||||||| | |||||| |||||||||| |||||| |||||||| |||  ||||||||||||    
T  19466203 ctaacggagagaaccacaatagtaaacgacagaagatttatgggaccaaattgagacactttatagttaaaggaccaaactgagaaaa 19466290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 22167885 - 22167811
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    ||||||| | |||||| ||||| | |||||| ||||||||||||||||||||| ||||||||  |||||||||||    
T  22167885 accaaaataataaacggcagaagatttatgggaccaaattgaaacacttaatatttaagggactaaactgagaaa 22167811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 40110687 - 40110737
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  40110687 ttatgggaccaaattgacacacttaatagttaagggatcaaactgagaaaa 40110737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 49141494 - 49141568
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||||||||| || ||||  ||||||| ||||| | |||||| ||||| |||||||||||||||||||||||||    
T  49141494 ctaacggagatgactaaaatggtaaacggcagaaaaattatgggaccaatttgaaacacttaatagttaagggat 49141568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 3979311 - 3979384
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||  ||||||| |||||||| ||||| | |||||| |||||||||| |||||| ||||||||||||    
T  3979311 ctaacggagaggaccaaaatagtaaacggcagaagaattatgggaccaaattgagacactttatagttaaggga 3979384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 14764347 - 14764267
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaact 261  Q
    ||||| ||||| || ||||||||||||||||||| | |||||  |||||||| | |||||||||| ||||||||| |||||    
T  14764347 ctaacagagatgactaaaacagtaaacgacagaagacttatgagaccaaattaacacacttaataattaagggatcaaact 14764267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 47560256 - 47560184
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||| |||||||||||||||| ||||||| |||  | | ||||||||||||||| ||||||| ||||    
T  47560256 taacggagatgaccaaaacagtaaacggcagaatatttaaaggatcaaattgaaacactttatagttagggga 47560184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 51726857 - 51726929
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||  ||  ||||||||||||    
T  51726857 aaaatagtaaacgacagaagatttatggaaccaaattgagacactttatagttaaatgaccaaactgagaaaa 51726929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 8092704 - 8092629
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||   ||| | ||||||||||||||||| |||||||||||||||||||  | ||||||||||    
T  8092704 accaaatcagtaaacggaggaagatttatggaaccaaattgatacacttaatagttaagggactacactgagaaaa 8092629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 14765092 - 14765179
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||  ||| ||| |||||||  || || | |||||| |||||||||| |||||||||||||||||||  ||||||||||||    
T  14765092 ctaacggagaggaccgaaatagtaaactgcaaaaaatttatgggaccaaattgacacacttaatagttaagggaccaaactgagaaaa 14765179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 16217636 - 16217490
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||||||| |||||| | || |||||| ||| |||||||||||||||||| || | |||||||| |||||        ||||||||||| |||||||     
T  16217636 tgtgtgctttttaaatctaaccgttgatcgccaatcttaaatgacacgtgga-aatgagttaacagattttgcaaaata-ctaacggagatgaccaaaat 16217539  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    |||||| |||| || | |||| | |||||||||| |||||| |||||||    
T  16217538 agtaaatgacataagatttataggaccaaattgagacactttatagtta 16217490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 254
Target Start/End: Original strand, 48934991 - 48935181
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggtta 162  Q
    |||| |||||||||||||||||| |  ||||| ||| |||||| ||||  ||||| |||| ||||||| || |||||||||| | ||||| || ||||||    
T  48934991 aataaaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcatcaatcttaaatgatatgtggacaa-gggtta 48935089  T
Q  163 acagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||  ||||||        ||||||||||| ||||||| ||  |||| ||||| |  || || |||||||||| |||||| ||||||| ||||    
T  48935090 actatttttgaaaacaaactaacggagatgaccaaaagaggtaacggcagaagacataagggaccaaattgagacactttatagttagggga 48935181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 26803251 - 26803301
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||| |||||||| |||||||||||||||| ||| ||||||||||||    
T  26803251 ttatggaatcaaattgacacacttaatagttaagagatcaaactgagaaaa 26803301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 38283600 - 38283721
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaat 142  Q
    |||| |||| || |||||||||||||||| || |||||||||| ||| ||   |||||||||  | | ||||||||| |  |||||||||| |||| | |    
T  38283600 ttttaatttttagaaaattcaatagaaataatcatatgttgtgagtttatcatatatttgtgcacctcctaaatccaactcttgatcacca-tcttgagt 38283698  T
Q  143 gacacgtggataaggggttaaca 165  Q
    ||||||| |||||||||||||||    
T  38283699 gacacgtagataaggggttaaca 38283721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 40109442 - 40109392
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||| |||||||| ||||||||||| ||||||||||||    
T  40109442 ttatgggaccaaattgacacacttaaaagttaagggatcaaactgagaaaa 40109392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 47411102 - 47411028
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||||||||| ||||||| ||||||||||| || | |||||  |||||||||| |||||| ||||||| |||||    
T  47411102 ctaacggagatgaccaaaatagtaaacgacataagatttatgagaccaaattgagacactttatagttaggggat 47411028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 25786164 - 25786115
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtg 150  Q
    |||||||||| |||||||| || |||||||||| ||||||||||||||||    
T  25786164 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25786115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 26056145 - 26056218
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||  ||||||| ||||||||||| || | |||||| |||||||||| |||||| ||||||| ||||    
T  26056145 ctaacggagaggaccaaaatagtaaacgacaaaagatttatgggaccaaattgagacactttatagttagggga 26056218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 3978161 - 3978093
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaa 250  Q
    |||||||||  ||||||| |||||||||||||| | |||||| | |||||||| |||||| ||||||||    
T  3978161 taacggagaggaccaaaatagtaaacgacagaagaattatgggatcaaattgagacactttatagttaa 3978093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 14169725 - 14169650
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| ||||||||||| || | |||||| |||||||||| ||| || |||||||| |||  ||||||||||||    
T  14169725 accaaaatagtaaacgacaaaagatttatgggaccaaattgagacattttatagttaaaggaccaaactgagaaaa 14169650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 24516408 - 24516365
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||    
T  24516408 accaaattgacacacttaatagttaagggatcaaactcagaaaa 24516365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 16218476 - 16218550
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||||||||| ||||||| | ||||||||| || | |||||| |||||||||| | |||| ||||||| |||||    
T  16218476 ctaacggagatgaccaaaatattaaacgacataagatttatgggaccaaattgagatactttatagttaggggat 16218550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 24517649 - 24517699
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||| |||||||| | ||||||||| ||||||||||||    
T  24517649 ttatgggaccaaattgacacacttaaaaattaagggattaaactgagaaaa 24517699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 49139919 - 49139846
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||||||||||| |||||||  | ||| | |||||  |||||||||| |||||| ||||||| ||||    
T  49139919 ctaacggagattaccaaaatagtaaactgcggaagatttatgagaccaaattgagacactttatagttatggga 49139846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 52181225 - 52181270
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgaca 146  Q
    |||||||||| |||||||| || |||||||||| ||||||||||||    
T  52181225 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgaca 52181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 9592355 - 9592283
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| || | ||||| ||||||||||| || | |||||| | ||||||||||||||| ||||||| ||||    
T  9592355 taacggaaatgatcaaaatagtaaacgacaaaagatttatgggatcaaattgaaacactttatagttagggga 9592283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 14071213 - 14071269
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    |||||||  ||||||||||||| | |||||| |||||||||| |||||| |||||||    
T  14071213 accaaaatggtaaacgacagaagacttatgggaccaaattgagacactttatagtta 14071269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 14390376 - 14390308
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||  |||||||  |||||||| |||| | ||||||||||||||||| ||| || |||||||    
T  14390376 ctaacggagaggaccaaaatggtaaacgaaagaagatttatggaaccaaattgagacattttatagtta 14390308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 25787089 - 25787133
Alignment:
Q  106 gctttctaaatccagccattgatcaccactcttaaatgacacgtg 150  Q
    ||||| |||||||| || |||||||||| ||||||||||||||||    
T  25787089 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25787133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 16269493 - 16269608
Alignment:
Q  57 aaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataag 156  Q
    ||||||||||||||| || |||||||||| |||||||| || |||||| |||||||||||||| || |||||||||| |||||||| |||||||||||||    
T  16269493 aaattcaatagaaataatcatatgttgtgcgttcattgtatgtttgtgcgctttctaaatccaacccttgatcaccaatcttaaattacacgtggataag 16269592  T
Q  157 gggttaacagtttttg 172  Q
    ||||||||| ||||||    
T  16269593 gggttaacaatttttg 16269608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 14326394 - 14326267
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattat------atgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactc 136  Q
    |||||||| |||  ||||||||||||||||| |||      |||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| ||    
T  14326394 tttttattagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttcattgtatatttgtgcgctttctaaattcagccattgatcaccaatc 14326295  T
Q  137 ttaaatgacacgtggataaggggttaac 164  Q
    |||||||||| ||||||||| |||||||    
T  14326294 ttaaatgacaagtggataagaggttaac 14326267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 14419404 - 14419277
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattat------atgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactc 136  Q
    |||||||| |||  ||||||||||||||||| |||      |||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| ||    
T  14419404 tttttattagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttcattgtatatttgtgcgctttctaaattcagccattgatcaccaatc 14419305  T
Q  137 ttaaatgacacgtggataaggggttaac 164  Q
    |||||||||| ||||||||| |||||||    
T  14419304 ttaaatgacaagtggataagaggttaac 14419277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 14328773 - 14328859
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||  ||||||| ||||||||||| || | |||||  |||||||| | |||||||||||||||||||| ||||||||||||    
T  14328773 taacggagaggaccaaaatagtaaacgacaaaagaattatgagaccaaattaagacacttaatagttaagggatcaaactgagaaaa 14328859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 14421783 - 14421869
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||  ||||||| ||||||||||| || | |||||  |||||||| | |||||||||||||||||||| ||||||||||||    
T  14421783 taacggagaggaccaaaatagtaaacgacaaaagaattatgagaccaaattaagacacttaatagttaagggatcaaactgagaaaa 14421869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 16251381 - 16251453
Alignment:
Q  99 tttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagttttt 171  Q
    |||||| ||||  |||||| |||| |||||||||| |||||||| ||||||||||| | | ||||||||||||    
T  16251381 tttgtgcgcttcataaatcaagcccttgatcaccaatcttaaattacacgtggatatgagattaacagttttt 16251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 33807806 - 33807734
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||  |||||||| ||||||| ||||| | |||||| | |||||||| |||||| ||||||||||||    
T  33807806 taacggagaggaccaaaacggtaaacggcagaaaatttatggcatcaaattgagacactttatagttaaggga 33807734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 14326251 - 14326184
Alignment:
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||| |||| | |||||| |||||||||| || || |||| ||||||||| ||||||||||||    
T  14326251 agtaaacgatagaagaattatgggaccaaattgagacgctcaataattaagggatcaaactgagaaaa 14326184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 14419261 - 14419194
Alignment:
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||| |||| | |||||| |||||||||| || || |||| ||||||||| ||||||||||||    
T  14419261 agtaaacgatagaagaattatgggaccaaattgagacgctcaataattaagggatcaaactgagaaaa 14419194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 13800112 - 13800062
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||| ||| |||||||||||||||  ||||||||||||    
T  13800112 ttatgggaccaaattgacacaattaatagttaagggaccaaactgagaaaa 13800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 31738481 - 31738408
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||  |||||||  ||||||  ||||| | |||||| ||||||||||||||||| ||||||| ||||    
T  31738481 ctaacggagaggaccaaaatggtaaaccgcagaagacttatgggaccaaattgaaacactttatagttagggga 31738408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 48866382 - 48866172
Alignment:
Q  57 aaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataag 156  Q
    ||||||||||||||| ||||||||||||| || ||||| ||||||||| ||||||||||||||| | ||||||| || ||| |||||||||||| | |||    
T  48866382 aaattcaatagaaataattatatgttgtgagtccattgtatatttgtgcgctttctaaatccagtccttgatcatcaatctaaaatgacacgtgaacaag 48866283  T
Q  157 gggttaacagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatg 256  Q
    ||||||||| ||||||        ||||||||||  |||| |  ||||||||  |||| | |||| | |||||||||| ||||||||||||| |||||      
T  48866282 gggttaacaatttttg-aaaaaaactaacggagaggaccatattagtaaacggaagaagacttataggaccaaattgacacacttaatagttcagggact 48866184  T
Q  257 aaactgagaaaa 268  Q
    ||||||||||||    
T  48866183 aaactgagaaaa 48866172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 12060893 - 12060782
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaat 142  Q
    ||||||||||||  |||||||||||||||||| || ||||| | ||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||| |    
T  12060893 tttttatttgtaggaaattcaatagaaatgatcatctgttgcgagtttattgtatatttgcgtgctttctaaattcagccattgatcaccaatcttaagt 12060794  T
Q  143 gacacgtggata 154  Q
    |||| |||||||    
T  12060793 gacatgtggata 12060782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 51825541 - 51825692
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||||||| ||||| || ||||||||||||| |||||| ||||||||||| ||| | ||||||| |||||        |||||||| || |||||||     
T  51825541 tgtgtgctttttaaattcaaccattgatcaccaatcttaactgacacgtggaaaagag-ttaacagattttgcaaaata-ctaacggatatgaccaaaat 51825638  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||||||| | |||||| ||||||||||||||||| ||||||||||||    
T  51825639 agtaaacgacagaagatttatgggaccaaattgaaacactttatagttaaggga 51825692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 35173253 - 35173178
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| ||||||||||| || |||||||  |||||||||||| |||||||||||||||||||||| ||||||||    
T  35173253 accaaaatagtaaacgacaaaagagttatgagaccaaattgaaatacttaatagttaagggatgaaattgagaaaa 35173178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 49334213 - 49334315
Alignment:
Q  57 aaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataag 156  Q
    ||||||||||||||| || |||||||||| |||||||| ||||||||| ||| || ||||||||||||  ||||||| | |||||||| | ||||| |||    
T  49334213 aaattcaatagaaataatcatatgttgtgagttcattgtatatttgtgcgctgtccaaatccagccatcaatcaccaatattaaatgaaatgtggacaag 49334312  T
Q  157 ggg 159  Q
    |||    
T  49334313 ggg 49334315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 43346467 - 43346532
Alignment:
Q  203 taaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||||| |||||||  |||||||||| |||||||||||||||||||| ||||||||||||    
T  43346467 taaacgacagaagagttatgagaccaaattgacacacttaatagttaagggatcaaactgagaaaa 43346532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 23561001 - 23561128
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattat------atgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactc 136  Q
    |||||||| |||  ||||||||||||||||| |||      |||||||  |||||||  |||| ||| |||||||||||| ||| |||||||||||| ||    
T  23561001 tttttattagtaagaaattcaatagaaatgaatatgatcctatgttgtaagttcattatatatctgtatgctttctaaattcagtcattgatcaccaatc 23561100  T
Q  137 ttaaatgacacgtggataaggggttaac 164  Q
    |||||||||| ||||| |||||||||||    
T  23561101 ttaaatgacatgtggacaaggggttaac 23561128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 23559937 - 23559850
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||  ||||||| |||||||||||||| | |||||| | |||||||| |||||||||| ||||||||  ||||||||||||    
T  23559937 ctaacggagaggaccaaaatagtaaacgacagaagaattatgggatcaaattgagacacttaataattaagggaccaaactgagaaaa 23559850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 54653964 - 54654037
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||  ||||||| |||||||||||||| | |||||| |||||||||| |||||| ||||||||||||    
T  54653964 ctaacggagaggaccaaaatagtaaacgacagaagaattatgggaccaaattgagacactttatagttaaggga 54654037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 21128040 - 21127956
Alignment:
Q  184 acggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||| || |||||||  ||||||| ||||| |||||||| |||||||||| |||||||||||||||| ||| ||||||| ||||    
T  21128040 acggaaatgaccaaaatggtaaacggcagaagagttatgggaccaaattgacacacttaatagttaagagatcaaactgaaaaaa 21127956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 39287684 - 39287606
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaa 141  Q
    ||||||||||||||||||||||| |  ||||| |||||||||| ||||  ||||| |||| |||||||||| |||||||    
T  39287684 aatagaaatgattatatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaa 39287606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 35174392 - 35174453
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| ||||||||| |||| |||||||| ||||  ||||||||||||||||||||||||    
T  35174392 accaaaatagtaaacgatagaagagttatgggaccattttgaaacacttaatagttaaggga 35174453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 47854721 - 47854612
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggtta 162  Q
    |||||||||||| |||||||||| || ||||| ||| ||| || ||||  ||||| |  | |||||||| | |||||||||||| ||||| ||||| |||    
T  47854721 aatagaaatgatcatatgttgtgagtccattgtatacttgcgtacttttcaaatctaatccttgatcacaaatcttaaatgacatgtggacaagggttta 47854622  T
Q  163 acagtttttg 172  Q
    ||||||||||    
T  47854621 acagtttttg 47854612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 7820508 - 7820440
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||  ||||||||||||||||||| || | ||||||  |||||||||||||||| |||||||    
T  7820508 ctaacggagaggaccaaaacagtaaacgacataaaatttatgggtccaaattgaaacactttatagtta 7820440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 12060764 - 12060689
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| |||||||| || ||||||||||   ||||||||| |||||||||||||||| ||  ||||||||||||    
T  12060764 accaaaatagtaaacggcaaaatagttatgaggccaaattgagacacttaatagttaagagactaaactgagaaaa 12060689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 43345437 - 43345350
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||  |||||||  |||||||| |||| | |||||| |||||||||||||| || ||||||||||||   |||||||||||    
T  43345437 ctaacggagaaaaccaaaatggtaaacgagagaagatttatgggaccaaattgaaacattttatagttaagggacctaactgagaaaa 43345350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 48826047 - 48825952
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| |  ||||| ||| |||||| ||||  ||| | | || |||||||||| |||||||||||| ||||| |||||    
T  48826047 aatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaacctaacccttgatcaccaatcttaaatgacatgtggacaaggg 48825952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 52293404 - 52293499
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| |   |||| ||| |||||| ||||  ||||  |||| |||||||||| |||||||||||| ||||| |||||    
T  52293404 aatagaaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatatagcccttgatcaccaatcttaaatgacatgtggacaaggg 52293499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 36626837 - 36626781
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||||||||||| || | ||| || ||||||||||||||||| |||||||    
T  36626837 accaaaacagtaaacgacataagatttaagggaccaaattgaaacacttcatagtta 36626781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 47808027 - 47808175
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||||||| |||||||| || |||||||||  |||||| ||||||||||| ||| | |||||||||||           |||||||||  |||||||     
T  47808027 tgtgtgctttttaaatccaaccgttgatcaccgatcttaactgacacgtggaaaagag-ttaacagtttt--gcaatatattaacggagaggaccaaaat 47808123  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagg 252  Q
    || ||||||||||| | |||||  |||||||||| |||||| ||||||||||    
T  47808124 agcaaacgacagaagatttatgagaccaaattgagacactttatagttaagg 47808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 12062394 - 12062469
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| |||||||  || || ||| |||| |||||||||| |||||||||||||||||||  ||||||| ||||    
T  12062394 accaaaatagtaaacagcaaaagagtaatgggaccaaattgagacacttaatagttaagggaccaaactgaaaaaa 12062469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 23561143 - 23561210
Alignment:
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||| ||||| | |||| | |||||||| | |||||||||| ||||||||| ||||||||||||    
T  23561143 agtaaacgtcagaagaattataggaccaaattaagacacttaataattaagggatcaaactgagaaaa 23561210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 33000842 - 33000884
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||||||||  |||||||||||||||| |||||||||||    
T  33000842 accaaattgaaacgtttaatagttaagggatcaaactgagaaa 33000884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 39531858 - 39531900
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||||||||| || ||||||||||||| |||||||||||    
T  39531858 accaaattgaaacatttcatagttaagggattaaactgagaaa 39531900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 8371338 - 8371265
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||  ||||||| |||||||  ||||| | ||||||||||||||||| ||| || ||||||| ||||    
T  8371338 ctaacggagaggaccaaaatagtaaactgcagaagatttatggaaccaaattgagacattttatagttagggga 8371265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 11219548 - 11219475
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| ||||||| |||||||| ||||| | | |||  |||||||||| |||||| ||||||| ||||    
T  11219548 ctaacggagatgaccaaaatagtaaacggcagaagactcatgagaccaaattgagacactttatagttagggga 11219475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 11220668 - 11220729
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| |||||||||||||| | |||| | |||||||||| |||||| ||||||| ||||    
T  11220668 accaaaatagtaaacgacagaagatttataggaccaaattgagacactttatagttagggga 11220729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 32980450 - 32980523
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| ||||||| |||||||| ||||| | |||| | |||||||||| ||||||  |||||| ||||    
T  32980450 ctaacggagatgaccaaaatagtaaacggcagaagatttataggaccaaattgagacactttgtagttagggga 32980523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 42632897 - 42632852
Alignment:
Q  106 gctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    ||||| |||||||| || |||||||||| |||||||||||||||||    
T  42632897 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgg 42632852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 25585831 - 25585899
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||| || |||| |||||||||||||| | |||||  |||||||||| ||  ||||||||||    
T  25585831 ctaacggagatgactaaaatagtaaacgacagaagatttatgagaccaaattgagacgtttaatagtta 25585899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 41386247 - 41386175
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||  ||||||| |||||||| |  || | ||||||||||||||||| |||||| ||||||| ||||    
T  41386247 taacggagaggaccaaaatagtaaacgtcgtaagatttatggaaccaaattgagacactttatagttagggga 41386175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 48867467 - 48867515
Alignment:
Q  220 atggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| |||||||||| |||||||||||||||||||  ||| ||||||||    
T  48867467 atgggaccaaattgacacacttaatagttaagggaccaaattgagaaaa 48867515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 53808436 - 53808368
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    |||| |||||| ||||||| ||||||||||| || | |||||| |||| ||||| |||||| |||||||    
T  53808436 ctaatggagatgaccaaaatagtaaacgacataagatttatgggaccagattgagacactttatagtta 53808368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 14510390 - 14510511
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaat 142  Q
    ||||||||||||  |||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||| ||||||||| || ||||||||    
T  14510390 tttttatttgtaggaaattcaatagaaatgatcatatgttgtgagtgcattgtatatttgtgtgctttctaaatccagtcattgatcatcaatcttaaat 14510489  T
Q  143 gacacgtggataaggggttaac 164  Q
    ||||| | || | |||||||||    
T  14510490 gacacatagacagggggttaac 14510511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 33837004 - 33836909
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| |  ||||| ||| |||||| ||||  ||||| |||| |||||||||| |||||||||||| ||||| |||||    
T  33837004 aatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggacaaggg 33836909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 2305775 - 2305584
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggtta 162  Q
    ||||||||||||||||||||||| |  ||||| ||| |||||| ||||  ||||| |||| |||||| ||| |||||||||||| ||||| || ||||||    
T  2305775 aatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatctccaatcttaaatgacatgtggacaa-gggtta 2305677  T
Q  163 acagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||  ||||||        ||||||||||  ||||||| ||  |||| ||||| |  || || |||||||||| |||||| ||||||| |||||    
T  2305676 actatttttgaaaacaaactaacggagaggaccaaaagaggtaacggcagaagacataagggaccaaattgagacactttatagttaggggat 2305584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 42246830 - 42246726
Alignment:
Q  58 aattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataagg 157  Q
    |||| ||||||||| || |||||||||| |||| ||| |||| |||| |||||||||||||| || ||||||| |  |||||| ||| |||||||||| |    
T  42246830 aatttaatagaaataatcatatgttgtgagttcgttgtatatatgtgcgctttctaaatccaacccttgatcatccatcttaagtgatacgtggataatg 42246731  T
Q  158 ggtta 162  Q
    |||||    
T  42246730 ggtta 42246726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 41312735 - 41312640
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| || ||||| |||  ||||| ||||  ||||| | || |||||||||| |||||||||||| ||||| |||||    
T  41312735 aatagaaatgattatatgttgtgagtccattgtatacctgtgtacttttcaaatctaacccttgatcaccaatcttaaatgacatgtggacaaggg 41312640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 14509326 - 14509240
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||  ||||||| |||||||||||||| | |||||| ||| |||| |||||||| ||||||||||||  ||| ||||||||    
T  14509326 taacggagaggaccaaaatagtaaacgacagaagatttatgggaccgaattaaaacactttatagttaagggaccaaagtgagaaaa 14509240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 12853004 - 12852931
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| ||||||| ||||||||| |||| | |||||| |||||||||| |||||| ||||||| ||||    
T  12853004 ctaacggagatgaccaaaatagtaaacgatagaagatttatgggaccaaattgagacactttatagttagggga 12852931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 7983708 - 7983780
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||||||  |||| | |||| | |||||||||| ||||||||||||||||| || ||||||||||||    
T  7983708 aaaacagtaaacggtagaagacttataggaccaaattgacacacttaatagttaaggaattaaactgagaaaa 7983780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 14510514 - 14510594
Alignment:
Q  188 agattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| || |||| |||||||| ||||| |||||| | |||||||||| |||||||||||||||||||  ||||| ||||||    
T  14510514 agatgactaaaatagtaaacggcagaagagttataggaccaaattgagacacttaatagttaagggactaaactaagaaaa 14510594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 3665459 - 3665364
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| |   |||| ||| |||||| ||||  ||||| || | |||||||||| |||||||||||| ||||| |||||    
T  3665459 aatagaaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtggacaaggg 3665364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 7037082 - 7037011
Alignment:
Q  183 aacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||| || |||||||  ||||||| ||||| | |||||| ||||||||||||||||| ||||||||||||    
T  7037082 aacggaaatgaccaaaatggtaaacggcagaagacttatgggaccaaattgaaacactttatagttaaggga 7037011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 40174762 - 40174821
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacact 240  Q
    ||||||||||| ||||||| ||||||| |||||| | |||||| ||||||||||||||||    
T  40174762 ctaacggagatgaccaaaatagtaaacaacagaagatttatgggaccaaattgaaacact 40174821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 21012078 - 21012152
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||||||||| ||||||| |||||||||| ||| | ||  || ||||||||||||||||| ||||||| |||||    
T  21012078 ctaacggagatgaccaaaatagtaaacgacggaagatttgagggaccaaattgaaacactttatagttaggggat 21012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 25570905 - 25570955
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||| ||||||||||||||||||||||||||||  | ||||||||||    
T  25570905 ttatggaatcaaattgaaacacttaatagttaagggactacactgagaaaa 25570955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 35801072 - 35801121
Alignment:
Q  210 cagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaa 259  Q
    ||||| ||||| || ||||||||||||||||| |||||||||||||||||    
T  35801072 cagaagagttaggggaccaaattgaaacactttatagttaagggatgaaa 35801121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 7982386 - 7982343
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  7982386 accaaattgacacactttatagttaagggatcaaactgagaaaa 7982343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 20630713 - 20630755
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||||||||  |||||||||||||||| |||||||||||    
T  20630713 accaaattgaaacgtttaatagttaagggattaaactgagaaa 20630755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 3533644 - 3533697
Alignment:
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| || | |||||  |||||||||| |||||||||||||||||||    
T  3533644 agtaaacgacaaaagatttatgagaccaaattgacacacttaatagttaaggga 3533697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 6707032 - 6706971
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| ||||||||  |||| | ||||||||||||||||| |||||| ||||||| ||||    
T  6707032 accaaaatagtaaacggaagaagatttatggaaccaaattgagacactttatagttagggga 6706971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 15650559 - 15650486
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| ||||||| ||||||||||| || | ||| |  |||||||||| |||||| ||||||| ||||    
T  15650559 ctaacggagatgaccaaaatagtaaacgacataagatttaagataccaaattgagacactttatagttagggga 15650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 29424622 - 29424683
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||| |||||| ||||||| | | || ||||||||||||||||| ||||||| ||||    
T  29424622 accaaaacaataaacggcagaatattcaagggaccaaattgaaacactttatagttagggga 29424683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 32614482 - 32614430
Alignment:
Q  202 gtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||| || ||||||||||| |||||||||||| | ||||||| ||||    
T  32614482 gtaaacgacataagagttatggaactaaattgaaacacgtgatagttagggga 32614430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 33458563 - 33458435
Alignment:
Q  44 ttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatg 143  Q
    |||||||| ||  ||||||||||||| | || |||||||||  || ||||| ||||||||| |||| |||||||||||| |||||||| | |||||||||    
T  33458563 ttttatttttaggaaattcaatagaagtaatcatatgttgtaagtccattgtatatttgtgcgcttactaaatccagcccttgatcactaatcttaaatg 33458464  T
Q  144 acacgtggataaggggttaacagtttttg 172  Q
    ||||||||| |||||||||||||||||||    
T  33458463 acacgtggacaaggggttaacagtttttg 33458435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 4167554 - 4167482
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||||||||||| | |||| | | |||||||| |||||||||||||||||||| ||||||||||||    
T  4167554 aaaacagtaaacgacagaagacttataggatcaaattgacacacttaatagttaagggattaaactgagaaaa 4167482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 30223858 - 30223946
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    ||||||||||||||||||||||| || ||||| ||| |||||| ||||  ||||| |||| |||||||||| |||||||||||| ||||    
T  30223858 aatagaaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 30223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 35315235 - 35315307
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||||||||||| | |||||| |||||||||| | |||||||| ||||||||| ||||||||||||    
T  35315235 aaaacagtaaacgacagaagacttatgggaccaaattgacatacttaataattaagggatcaaactgagaaaa 35315307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 22060659 - 22060513
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||||||| |||||||| || |||||||||| ||||||||||| |||||| || | |||||||| |||||        ||||||||||| |||||||     
T  22060659 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgactcgtgga-aatgagttaacagattttgtaaaata-ctaacggagatgaccaaaat 22060562  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    |||||||| || || | || |||||||||||||| |||||| |||||||    
T  22060561 agtaaacggcataagacttgtggaaccaaattgagacactttatagtta 22060513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 249
Target Start/End: Original strand, 43936022 - 43936206
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggtta 162  Q
    |||||||||||| |||||||||| | |||||| ||| |||||| ||||  ||||| | |||||||||| || | |||||||||| ||||| ||  |||||    
T  43936022 aatagaaatgatcatatgttgtgagctcattgtatacttgtgtacttttcaaatctaaccattgatcatcaattttaaatgacatgtggacaattggtta 43936121  T
Q  163 acagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    || |||||||        ||||||||||  ||||||| |||||||||||||| | |||||  |||||||| | | |||| |||||||    
T  43936122 actgtttttg--aaaaaactaacggagaggaccaaaatagtaaacgacagaagaattatgagaccaaattaagaaactttatagtta 43936206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 30222880 - 30222792
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    ||||||||||||||||||||||| || ||||| ||| |||||| ||||  ||||| || | |||||||||| |||||||||||| ||||    
T  30222880 aatagaaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtgg 30222792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 35128112 - 35128182
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttg 172  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||| |||| |||||||| |||||    
T  35128112 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgga-aaggagttaacagattttg 35128182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 10257401 - 10257471
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| |||||||||||  | |||||||| |||||||||| |||||||||||||||||||| ||| ||||||||    
T  10257401 aaaatagtaaacgaca--agagttatgggaccaaattgagacacttaatagttaagggatcaaattgagaaaa 10257471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 41126474 - 41126385
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgga 152  Q
    ||||||||||||||||||||||| |   |||| ||| |||||| ||||  ||||| |||| |||||||||| |||||||||||| |||||    
T  41126474 aatagaaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgga 41126385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 7148056 - 7148124
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||  ||||||||||||||||||| || | ||| || ||||||||||||||||| |||||||    
T  7148056 ctaacggagagaaccaaaacagtaaacgacataagatttaagggaccaaattgaaacactttatagtta 7148124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 36673717 - 36673811
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataagg 157  Q
    |||| |||||||||||||||||| |  ||||| ||| |||||| ||||  ||| | |||| |||||||||| |||||||||||| ||||| ||||    
T  36673717 aatataaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaacctagcccttgatcaccaatcttaaatgacatgtggacaagg 36673811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 14206791 - 14206723
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||| | ||||| |||||||||||||| | |||| | |||||||||||||| || |||||||    
T  14206791 ctaacggagatgagcaaaatagtaaacgacagaagatttataggaccaaattgaaacattttatagtta 14206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 14215481 - 14215413
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||| | ||||| |||||||||||||| | |||| | |||||||||||||| || |||||||    
T  14215481 ctaacggagatgagcaaaatagtaaacgacagaagatttataggaccaaattgaaacattttatagtta 14215413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 41618380 - 41618460
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatg 143  Q
    ||||||||||||||||||||||| |  ||||| ||| |||||| ||||  ||||| | || |||||||||| |||||||||    
T  41618380 aatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctaacccttgatcaccaatcttaaatg 41618460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 4168891 - 4168934
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  4168891 accaaattgacacactttatagttaagggatcaaactgagaaaa 4168934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 10256229 - 10256154
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| | ||||||| |||| |||||||  ||||  |||| |||||||||||||||||||  ||||||||||||    
T  10256229 accaaaatactaaacgatagaagagttatgagaccattttgagacacttaatagttaagggaccaaactgagaaaa 10256154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 22061715 - 22061785
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttg 172  Q
    |||||||||| |||||||| || |||||| ||| |||||||||||||||||  |||| |||||||| |||||    
T  22061715 tgtgtgctttttaaatccaaccgttgatccccaatcttaaatgacacgtgg-caaggagttaacaggttttg 22061785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 43007569 - 43007715
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||| ||| ||||||||||| ||||||| || | |||||||||||| ||| || | |||||||| |||||        ||||||||||  || ||||     
T  43007569 tgtgtgttttgtaaatccagccgttgatcaacaattttaaatgacacgcgga-aatgagttaacagattttgcaaaata-ctaacggagagaactaaaat 43007666  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||| || | |||||| |||||||||| |||||| |||||||    
T  43007667 agtaaacgacataagacttatgggaccaaattgagacactttatagtta 43007715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 132034 - 132084
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| ||||||| || |||||||||||||||||||  ||||||||||||    
T  132034 ttatgggaccaaatcgacacacttaatagttaagggaccaaactgagaaaa 132084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 13287036 - 13287066
Alignment:
Q  225 accaaattgaaacacttaatagttaagggat 255  Q
    |||||||||||||||||||||||||||||||    
T  13287036 accaaattgaaacacttaatagttaagggat 13287066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 19279622 - 19279683
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| ||||||||||| || | |||||| |||||||||| |||||| ||||||| ||||    
T  19279622 accaaaatagtaaacgacaaaaaatttatgggaccaaattgagacactttatagttagggga 19279683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 38406124 - 38406063
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||||||||| ||||| | |||||||||||  |||| |||||| ||||||| ||||    
T  38406124 accaaaacagtaaacgtcagaagatttatggaaccagtttgagacactttatagttagggga 38406063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 43006503 - 43006430
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| ||||||| || ||||| || || | ||| || |||||||||| |||||||||||||| ||||    
T  43006503 ctaacggagatgaccaaaatagcaaacggcataagacttaggggaccaaattgagacacttaatagttagggga 43006430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 46674933 - 46675006
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    |||||||||  ||||||| |||||||| || || | |||||| ||||||| || |||||| |||||||||||||    
T  46674933 taacggagaggaccaaaatagtaaacggcaaaagatttatgggaccaaatcgagacactttatagttaagggat 46675006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 47163386 - 47163278
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggtta 162  Q
    |||||||||||| |||||||||| || ||||| ||| ||| || ||||  ||||| |  | |||||||| | |||||||||||| ||||| || ||||||    
T  47163386 aatagaaatgatcatatgttgtgagtccattgtatacttgcgtacttttcaaatctaatctttgatcacaaatcttaaatgacatgtggacaa-gggtta 47163288  T
Q  163 acagtttttg 172  Q
    ||| ||||||    
T  47163287 acaatttttg 47163278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 47537082 - 47537123
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaa 266  Q
    |||||||||||||| |||||||||||||||  ||||||||||    
T  47537082 accaaattgaaacatttaatagttaagggaccaaactgagaa 47537123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 22744863 - 22744791
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||  ||||||| |||||||| || || | |||| | ||||||||||||||||| ||||||| ||||    
T  22744863 taacggagaagaccaaaatagtaaacggcataagatttataggaccaaattgaaacactttatagttagggga 22744791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 8096426 - 8096529
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaat 142  Q
    ||||||||||||  |||||||||||||||||| || ||||| | ||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  8096426 tttttatttgtaggaaattcaatagaaatgatcatgtgttgcgagtttattgtatatttgcgtgctttctaaatccagccattgatcaccaatcttaaat 8096525  T
Q  143 gaca 146  Q
    ||||    
T  8096526 gaca 8096529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 254
Target Start/End: Original strand, 36071252 - 36071449
Alignment:
Q  57 aaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataag 156  Q
    ||||| ||||||||| || | |||||||| | | |||| ||||||||| ||  ||||||||||||| |||||||||| | |||||| ||||||||||||     
T  36071252 aaatttaatagaaataatcacatgttgtgaggttattgtatatttgtgcgccctctaaatccagcccttgatcaccaattttaaataacacgtggataaa 36071351  T
Q  157 gggttaacagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||  | ||||        ||||| ||||| |||||||   ||||||  |||| |||||||| ||||| |||||| |||  ||||||||||||    
T  36071352 gggttaacgatatttggaaaacaactaacagagatgaccaaaatgataaacggtagaagagttatgggaccaatttgaaatactctatagttaaggga 36071449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 8095452 - 8095377
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| ||||||||||| || ||| |||| |||||||||| |||||||||||||||||||  ||||||||||||    
T  8095452 accaaaatagtaaacgacaaaagagtaatgggaccaaattgagacacttaatagttaagggaccaaactgagaaaa 8095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 20308711 - 20308636
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| |||||||||||||| |||||||  |||||||||| ||||||||||||||||  |  ||||||||||||    
T  20308711 accaaaatagtaaacgacagaagagttatgagaccaaattgagacacttaatagttaagatactaaactgagaaaa 20308636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 21095344 - 21095269
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| |||||||||||||| |||||||  |||||||||| ||||||||||||||||  |  ||||||||||||    
T  21095344 accaaaatagtaaacgacagaagagttatgagaccaaattgagacacttaatagttaagatactaaactgagaaaa 21095269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 13367048 - 13367121
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||  ||||||| |||||||| ||||| | |||||| |||||||| |||||||| ||||||||||||    
T  13367048 ctaacggagaggaccaaaatagtaaacggcagaagatttatgggaccaaattaaaacactttatagttaaggga 13367121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 36940032 - 36940105
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    |||||||||| ||||||| |||||||| ||||| | |||||  ||||||||||||||||| ||||||| |||||    
T  36940032 taacggagatgaccaaaatagtaaacggcagaagatttatgataccaaattgaaacactttatagttaggggat 36940105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 41522701 - 41522773
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||||| ||||| | |||| | |||||||||| |||||||||||||||  ||| ||||||||||||    
T  41522701 aaaacagtaaacggcagaagacttataggaccaaattgacacacttaatagttaaatgattaaactgagaaaa 41522773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 22619976 - 22619926
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||| |||||||| ||||||||||| ||||||||||||    
T  22619976 ttatgggaccaaattgacacacttaaaagttaagggatcaaactgagaaaa 22619926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 22621169 - 22621219
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||  |||||||||||||||||||| ||||||||||||    
T  22621169 ttatgggaccaaattgccacacttaatagttaagggatcaaactgagaaaa 22621219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 24069456 - 24069518
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    |||||||  ||||||| ||||| |||||||| |||||||||| |||||| |||||||||||||    
T  24069456 accaaaatggtaaacggcagaagagttatgggaccaaattgagacactttatagttaagggat 24069518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 31624102 - 31623951
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||||||| | |||||| || ||||||| || |||||| ||||||||||| |||| |||||||| |||||         |||||||||  || ||||     
T  31624102 tgtgtgctttattaatccaaccgttgatcatcaatcttaagtgacacgtgga-aaggagttaacagattttgcaacatag-taacggagaggactaaaat 31624005  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    | ||||||||| || | |||||| ||||||||||||||||| ||||||| ||||    
T  31624004 aataaacgacataagatttatgggaccaaattgaaacactttatagttagggga 31623951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 36756182 - 36756109
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| ||||||| ||||||||||| || | |||||  |||| |||||||||||| ||||||| ||||    
T  36756182 ctaacggagatgaccaaaatagtaaacgacataagatttatgtgaccagattgaaacactttatagttatggga 36756109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 39220797 - 39220728
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaa 250  Q
    ||||| ||||| || |||| |||||||| ||||| | ||| |||| ||||||||||||||||||||||||    
T  39220797 ctaacagagataacgaaaatagtaaacggcagaagacttaaggaatcaaattgaaacacttaatagttaa 39220728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 39546675 - 39546735
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacactt 241  Q
    ||||||||||| |||||||| ||||||| || |||| |||||| |||||||||| ||||||    
T  39546675 ctaacggagatgaccaaaacggtaaacggcataatatttatgggaccaaattgagacactt 39546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 2421303 - 2421373
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactga 263  Q
    ||||||| | |||||| ||||| | || ||| ||||||||||||||||||||| ||||||||  |||||||    
T  2421303 accaaaataataaacggcagaagatttctgggaccaaattgaaacacttaatatttaagggactaaactga 2421373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 7486195 - 7486121
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||||||||  ||||||| |||||||  || || | |||||| ||||||||||| ||||| |||||||||||||    
T  7486195 ctaacggagaggaccaaaatagtaaacagcaaaagatttatgggaccaaattgaagcactttatagttaagggat 7486121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 9190484 - 9190526
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||||||||| |||||||||||||||  |||||||||||    
T  9190484 accaaattgaaacatttaatagttaagggactaaactgagaaa 9190526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 34616210 - 34616160
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| |||||||||| |||||| ||||||||| ||| ||||||||||||    
T  34616210 ttatgggaccaaattgagacactttatagttaagagatcaaactgagaaaa 34616160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 41867012 - 41866938
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||| ||||| ||||||| |||||| | |  || | |||||| ||||||||||||||||| |||||||||||||    
T  41867012 ctaacagagatgaccaaaatagtaaatggcgtaaaatttatgggaccaaattgaaacactttatagttaagggat 41866938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 117166 - 117109
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaaca 238  Q
    ||||||||||  ||||||||| |||||||||||| | |||||| | ||||||||||||    
T  117166 ctaacggagaggaccaaaacaataaacgacagaagatttatgggatcaaattgaaaca 117109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 38590016 - 38589967
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtg 150  Q
    |||||||||| ||||| || || |||||||||| ||||||||||||||||    
T  38590016 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtg 38589967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 255
Target Start/End: Original strand, 40059187 - 40059400
Alignment:
Q  43 tttttatttgtataaaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaat 142  Q
    |||||| || || |||||||||||||||| ||||||||||||| |||||||| |||| |||| ||||||||||||||||  ||||||| || ||||||||    
T  40059187 tttttaattttagaaaattcaatagaaataattatatgttgtgagttcattgtatatgtgtgcgctttctaaatccagctcttgatcatcaatcttaaat 40059286  T
Q  143 gacacgtggataaggggttaacagtttttg--nnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacact 240  Q
    |||||||| | || |||||||| |||||||           |||||||||| |||||||   |||||| ||||| |||||| | ||||| || |||||||    
T  40059287 gacacgtgaacaa-gggttaacggtttttgaaaaaaaaaattaacggagatcaccaaaatgataaacggcagaagagttattggaccaatttaaaacact 40059385  T
Q  241 taatagttaagggat 255  Q
    ||||||||| |||||    
T  40059386 taatagttaggggat 40059400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 22819559 - 22819634
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||| ||| ||||||||    
T  22819559 accaaaatagtaaacggcagaagagttatgggaccaaattgagacacttaatagttaagggatcaaattgagaaaa 22819634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 12830937 - 12831023
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||  ||||||| |||||||  ||||| |||||| | |||||||||| |||||||||||||||||||| ||||||||||||    
T  12830937 taacggagaggaccaaaatagtaaacagcagaagagttataggaccaaattgagacacttaatagttaagggatcaaactgagaaaa 12831023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 12862917 - 12863003
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||  ||||||| |||||||  ||||| |||||| | |||||||||| |||||||||||||||||||| ||||||||||||    
T  12862917 taacggagaggaccaaaatagtaaacagcagaagagttataggaccaaattgagacacttaatagttaagggatcaaactgagaaaa 12863003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 15857616 - 15857703
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||| |||||||  |||||||||| || | |||||| | ||||||||||||||| ||||||||||||  ||||||||||||    
T  15857616 ctaacggagatgaccaaaatggtaaacgacataagatttatgggaacaaattgaaacactttatagttaagggaccaaactgagaaaa 15857703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 40058136 - 40058062
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||||||||| |||||||  ||||||| ||||| |||||||  ||||| |||||||||||||||||||||||||    
T  40058136 ctaacggagatgaccaaaatggtaaacggcagaagagttatgagaccaatttgaaacacttaatagttaagggat 40058062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 32734249 - 32734163
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||| || ||||||| |||||||||||||| |||||||| |||||||| | |||| ||||||||||||||  ||||||| ||||    
T  32734249 ctaacggaaatgaccaaaatagtaaacgacagaagagttatgggaccaaattaagacac-taatagttaagggaccaaactgaaaaaa 32734163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 42510232 - 42510145
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||  ||||||| |||||||| ||||| | |||||| |||||||||| |||||| ||||||||||||  ||||||| ||||    
T  42510232 ctaacggagagaaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaagggaccaaactgaaaaaa 42510145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 26911398 - 26911284
Alignment:
Q  58 aattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataagg 157  Q
    |||| ||| ||||| || |||||||| | |||||||  |||| |||| |||||||||||||| || |||||||    |||||| |||||||||||||| |    
T  26911398 aatttaattgaaataatcatatgttgcgagttcattctatatatgtgcgctttctaaatccaacccttgatcattcatcttaagtgacacgtggataatg 26911299  T
Q  158 ggttaacagtttttg 172  Q
    ||||||| |||||||    
T  26911298 ggttaacggtttttg 26911284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 20988925 - 20988844
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatga 144  Q
    ||||||||||||||||||||||| |  ||||| ||| |||||| ||||  ||||| |||| |||||||||| ||||||||||    
T  20988925 aatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcctttgatcaccaatcttaaatga 20988844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 18678082 - 18678020
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    |||||||| ||||||||||||| | |||||| |||||||||| |||||| ||||||| |||||    
T  18678082 accaaaacggtaaacgacagaagatttatgggaccaaattgagacactttatagttaggggat 18678020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 15614902 - 15615026
Alignment:
Q  124 ttgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatgg 223  Q
    |||||||||| |||||||||||  ||||| ||||| |||||  ||||||        ||||| ||||  ||||||| |||||||| ||||| | ||||||    
T  15614902 ttgatcaccaatcttaaatgacttgtggacaaggg-ttaactatttttgaaaataaactaacagagaggaccaaaatagtaaacggcagaaaatttatgg 15615000  T
Q  224 aaccaaattgaaacacttaatagtta 249  Q
    ||||||||||| |||||| |||||||    
T  15615001 aaccaaattgagacactttatagtta 15615026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 42511666 - 42511751
Alignment:
Q  183 aacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||  |||||| || ||||| ||||| | |||||||| |||||||| |||||| ||||||||||||  ||||||| ||||    
T  42511666 aacggagatagccaaaataggaaacggcagaagatttatggaagcaaattgagacactttatagttaagggaccaaactgaaaaaa 42511751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 7426744 - 7426672
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||| | ||| | | ||||||||||| ||||| |||||||||| ||||||||| ||||| ||||||    
T  7426744 aaaacagtaaatggcagtagacttatggaaccatattgacacacttaataattaagggattaaactaagaaaa 7426672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 11907203 - 11907245
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||||||||| |||||||||||||||  |||||||||||    
T  11907203 accaaattgaaacatttaatagttaagggaccaaactgagaaa 11907245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 39135690 - 39135732
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||||||||| |||||||||||||||  |||||||||||    
T  39135690 accaaattgaaacatttaatagttaagggagcaaactgagaaa 39135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 42979564 - 42979498
Alignment:
Q  183 aacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||  ||||||| |||||||| ||||| | |||| | ||||||||||||||||| |||||||    
T  42979564 aacggagaggaccaaaatagtaaacggcagaagaattattggaccaaattgaaacactttatagtta 42979498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 15510145 - 15510210
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgat 128  Q
    ||||||||||||||||||||||| || ||||| ||| |||||| ||||  ||||| |||| |||||    
T  15510145 aatagaaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgat 15510210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 22819515 - 22819564
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaa 230  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||| ||||||    
T  22819515 ctaacggagatgaccaaaatagtaaacggcagaagagttatgggaccaaa 22819564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 27894033 - 27894094
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| |||||||||| ||| | |||||  ||||||||||||||||| ||||||| ||||    
T  27894033 accaaaatagtaaacgacggaaaatttatgagaccaaattgaaacactttatagttagggga 27894094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 38471395 - 38471334
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| ||||||||  |||| | ||||||||||||||||||||| || | ||||||||||    
T  38471395 accaaaatagtaaacggaagaagatttatggaaccaaattgaaacaatttaaagttaaggga 38471334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 2167524 - 2167576
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaata 245  Q
    ||||||| | |||||| ||||| | |||||| |||||||||||||||||||||    
T  2167524 accaaaataataaacggcagaagatttatgggaccaaattgaaacacttaata 2167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 254
Target Start/End: Original strand, 2141 - 2336
Alignment:
Q  58 aattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataagg 157  Q
    |||| ||||||||| || ||||||| || |||||||| |||| |||| ||| |||||||||| || ||||||| |  |||||| |||||||||||||| |    
T  2141 aatttaatagaaataatcatatgttttgagttcattgtatatatgtgcgctctctaaatccaacccttgatcatccatcttaagtgacacgtggataatg 2240  T
Q  158 ggttaacagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||| ||||||||        |||||||| |  ||||||| |||||||   |||| |||||||| ||||||||||||||||| ||| ||| ||||    
T  2241 ggttaatagtttttg-aaaaaaactaacggaaaggaccaaaatagtaaacagtagaagagttatgggaccaaattgaaacactttataattagggga 2336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 40146508 - 40146611
Alignment:
Q  57 aaattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataag 156  Q
    ||||||||||||||| || |||||||||| || ||||| ||||||||| |||| |||||||||||| |||||||| |  ||||||||||| ||||| |||    
T  40146508 aaattcaatagaaataatcatatgttgtgcgtccattgtatatttgtgcgcttgctaaatccagcccttgatcactaaacttaaatgacatgtggacaag 40146607  T
Q  157 gggt 160  Q
    ||||    
T  40146608 gggt 40146611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 44159203 - 44159116
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||| ||||||| | |||||| ||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  44159203 ctaacggagatgaccaaaataataaacggcagaagagttgtggaaccaaattgaaacacttaatagttaagagatcaaactgaaaaaa 44159116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 17319148 - 17319074
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    ||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||||| ||| |||||||||||    
T  17319148 accaaaatagtaaacgccagaagatttatggaaccaaattgaaacactttatagttaagagatcaaactgagaaa 17319074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 5688557 - 5688708
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||||||| |||||||| || ||||||| || |||||| ||||||||||| || | |||||||  |||||        ||||||||||| |||||||     
T  5688557 tgtgtgctttataaatccaaccgttgatcatcaatcttaagtgacacgtgga-aatgagttaacaaattttgcaaaata-ctaacggagatgaccaaaat 5688654  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| || | ||||||||||||||||| |||||| ||||||| ||||    
T  5688655 agtaaacgacataagatttatggaaccaaattgagacactttatagttagggga 5688708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 50531769 - 50531841
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| ||||||||||| || |||||||| |||||||||| |||||||||||||||||||| ||| ||||||||    
T  50531769 aaaatagtaaacgacaaaagagttatgggaccaaattgagacacttaatagttaagggatcaaattgagaaaa 50531841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 34439658 - 34439745
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||| ||||||| |||||||| ||||| | |||||| |||||||||||||| || ||||||||||||  | ||||||||||    
T  34439658 ctaacggagatgaccaaaatagtaaacggcagaagatttatgggaccaaattgaaacattttatagttaagggaccacactgagaaaa 34439745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 38417671 - 38417584
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||  ||| ||| ||||||||||| || | |||||| |||||||||| |||||||||||||||||||  ||||||||||||    
T  38417671 ctaacggagaggaccgaaatagtaaacgacataagatttatgggaccaaattgacacacttaatagttaagggaccaaactgagaaaa 38417584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 38419015 - 38419102
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||||||| || ||||||||||||| ||||| | |||||  |||||||||| |||||||||| |||||| || ||||||||||||    
T  38419015 ctaacggagatgactaaaacagtaaacggcagaagacttatgagaccaaattgacacacttaataattaaggaattaaactgagaaaa 38419102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 1273353 - 1273504
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggttaacagtttttgnnnnnnnnctaacggagattaccaaaac 200  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||| || | | |||||| |||||        ||||||||||  |||||||     
T  1273353 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgga-aatgaggtaacagattttg-caaaatactaacggagaggaccaaaat 1273450  T
Q  201 agtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    || |||||||| || | |||||| |||||||||| |||||| ||||||| ||||    
T  1273451 agcaaacgacataagacttatgggaccaaattgagacactttatagttagggga 1273504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 29833606 - 29833518
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    ||||||||||||||||||||||| || ||||| ||| |||||| ||||  ||||| |||| |||||||||| |||||| ||||| ||||    
T  29833606 aatagaaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaattgacatgtgg 29833518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 30671946 - 30672041
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||| ||||||||||||| |  ||||| |||||||||| ||||  ||||| |||| |||||||||| |||||||| ||| ||||| |||||    
T  30671946 aatagaaattattatatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaataacatgtggacaaggg 30672041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 34438512 - 34438437
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| |||||||| ||||| | |||||| |||||||||| |||||| ||||||||||||  ||||||||||||    
T  34438512 accaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaagggactaaactgagaaaa 34438437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 6140358 - 6140411
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattga 234  Q
    |||||||| || ||||||| |||||||||||||| |||||||||||||||||||    
T  6140358 ctaacggaaatgaccaaaatagtaaacgacagaagagttatggaaccaaattga 6140411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 5687292 - 5687220
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||||| ||||||| |||||||| || || | |||||| |||||||||| |||||| ||||||||||||    
T  5687292 taacggagatgaccaaaatagtaaacggcaaaagatttatgggaccaaattgagacactttatagttaaggga 5687220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 29834314 - 29834402
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    |||| |||||||||||||||||| || ||||| ||| |||||| ||||  ||||  |||| |||||||||| |||||||||||| ||||    
T  29834314 aataaaaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatatagcccttgatcaccaatcttaaatgacatgtgg 29834402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 35787914 - 35787846
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    ||||||||||  |||||||| ||||||||||||| | |||||| |||||||||||||| || |||||||    
T  35787914 ctaacggagaggaccaaaacggtaaacgacagaagatttatgggaccaaattgaaacattttatagtta 35787846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 43419397 - 43419460
Alignment:
Q  205 aacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| ||||| ||||| || |||||||||| |||||| |||||||||||| |||||||||||||    
T  43419397 aacggcagaagagttaagggaccaaattgagacactttatagttaagggacgaaactgagaaaa 43419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 50530609 - 50530534
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| ||||||||| |||| |||||||| ||||  |||| ||||||||||||||| |||  ||||||||||||    
T  50530609 accaaaatagtaaacgatagaagagttatgggaccattttgagacacttaatagttaaaggaccaaactgagaaaa 50530534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 526600 - 526682
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgac 145  Q
    ||||||||||||||||||||||| |  ||||| ||| |||||| ||||  ||||  |||| |||||||||| |||||||||||    
T  526600 aatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatttagcccttgatcaccaatcttaaatgac 526682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 41348320 - 41348270
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| | |||||||| |||||||||||||||||||| ||||||||||||    
T  41348320 ttatgggatcaaattgacacacttaatagttaagggatcaaactgagaaaa 41348270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 86921 - 86868
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattga 234  Q
    ||||||||||  |||||||||||||||| ||||||| |||||| ||||||||||    
T  86921 ctaacggagaagaccaaaacagtaaacggcagaatatttatgggaccaaattga 86868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 11113860 - 11113787
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||||||| || |||||||  ||||||| ||||| |||||||  |||||||||| |||||| ||||||||||||    
T  11113860 ctaacggaaatgaccaaaatggtaaacggcagaagagttatgagaccaaattgagacactttatagttaaggga 11113787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 26393146 - 26393199
Alignment:
Q  202 gtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggat 255  Q
    ||||||||||||| |||||||| |||||||||| |||||| |||||||| ||||    
T  26393146 gtaaacgacagaagagttatgggaccaaattgagacactttatagttaaaggat 26393199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 48206399 - 48206207
Alignment:
Q  58 aattcaatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataagg 157  Q
    |||| ||||||||| || ||||||||||  ||||||| |||| |||| |||||||||||| | |  ||||||| |  |||||| ||||| |||||||| |    
T  48206399 aatttaatagaaataatcatatgttgtgaattcattgtatatatgtgcgctttctaaatctaactcttgatcatccatcttaagtgacatgtggataatg 48206300  T
Q  158 ggttaacagtttttgnnnnnnnnctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagg 252  Q
    |||| || |||||||        |||||| | || ||||||| ||||||||  |||| |||||| | | ||||||||||||||| ||| ||||||    
T  48206299 ggtt-acggtttttg-aaaaaaactaacgtaaatgaccaaaatagtaaacggtagaaaagttataggatcaaattgaaacactttataattaagg 48206207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 4373602 - 4373522
Alignment:
Q  73 attatatgttgtgggttcattgaatatt-tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgga 152  Q
    ||||||||||||| || ||||| |||   ||||||||||  ||||||||||||| ||||||| || |||||||||||||||    
T  4373602 attatatgttgtgagtccattgtataccatgtgtgcttttcaaatccagccattaatcaccaatcctaaatgacacgtgga 4373522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 23153142 - 23153210
Alignment:
Q  62 caatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatca 130  Q
    |||||||||| ||||||||||||| |||||||| ||| ||||||| |||  ||||||| || |||||||    
T  23153142 caatagaaattattatatgttgtgagttcattgtataattgtgtgtttttcaaatccaacccttgatca 23153210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 38370400 - 38370340
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacactt 241  Q
    ||||||||||| |||||||  ||||||||||||| |||||||  |||||||||| ||||||    
T  38370400 ctaacggagatgaccaaaatggtaaacgacagaagagttatgagaccaaattgatacactt 38370340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 47606486 - 47606570
Alignment:
Q  68 aaatgattatatgttgtgggttcattgaatattt-gtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    ||||||| |||||||||| ||| |||| | |||| ||||||||| |||||||| || |||||||||| || ||| ||||||||||    
T  47606486 aaatgatcatatgttgtgagtttattgtaaattttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 47606570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 936452 - 936357
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggg 158  Q
    ||||||||||||||||||||||| |   |||| ||| |||||| ||||  ||||| ||   |||||||||| |||||||||||| ||||| |||||    
T  936452 aatagaaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatctagttgttgatcaccaatcttaaatgacatgtggacaaggg 936357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 6139115 - 6139028
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||| ||||| ||||||| | ||||| ||| || |||||||  |||||||||| ||| |||||| ||||||||  ||||||||||||    
T  6139115 ctaacagagatgaccaaaataataaacaacataagagttatgagaccaaattgagacatttaataattaagggaccaaactgagaaaa 6139028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 15446548 - 15446728
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtggataaggggtta 162  Q
    |||||||||||| |||||||||| |  ||||| ||  |||||| ||||  ||||| | || |||||||||| |||||||||||| ||||| ||||| |||    
T  15446548 aatagaaatgatcatatgttgtgagcccattgtatggttgtgtacttttaaaatcaaacccttgatcaccaatcttaaatgacatgtggacaaggg-tta 15446646  T
Q  163 acagtttttgnnnnnnnn---ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacactt 241  Q
     | |||||||           ||||||||||  ||||||| ||||||||  |||| | |||||| |||||||||||||||||    
T  15446647 gctgtttttgaaaaagaaaaactaacggagaggaccaaaatagtaaacggtagaaaatttatgggaccaaattgaaacactt 15446728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 55953772 - 55953823
Alignment:
Q  101 tgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgga 152  Q
    |||||||||| ||||| || || |||||||||| ||||||||||||||||||    
T  55953772 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtgga 55953823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 11482870 - 11482828
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||||||||| |||||||||||||||  |||||||||||    
T  11482870 accaaattgaaacatttaatagttaagggaccaaactgagaaa 11482828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 41349560 - 41349610
Alignment:
Q  218 ttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||| | |||||||| |||||||| ||||||||||| ||||||||||||    
T  41349560 ttatgggatcaaattgacacacttaaaagttaagggatcaaactgagaaaa 41349610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 43418106 - 43418064
Alignment:
Q  226 ccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||||||||||||||| ||||||||||||  ||||||||||||    
T  43418106 ccaaattgaaacactttatagttaagggaccaaactgagaaaa 43418064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 47243026 - 47242984
Alignment:
Q  225 accaaattgaaacacttaatagttaagggatgaaactgagaaa 267  Q
    |||||||| ||||| |||||||||||||||| |||||||||||    
T  47243026 accaaattaaaacatttaatagttaagggattaaactgagaaa 47242984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 11114978 - 11115051
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||   ||||||  ||||||||||||| |||||||| |||||||||| | |||| ||||||| ||||    
T  11114978 ctaacggagaggtccaaaatggtaaacgacagaagagttatgggaccaaattgagatactttatagttagggga 11115051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 55952931 - 55952870
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||| | ||||||||| || |||||||  ||||||||||||||||| ||||||| ||||    
T  55952931 accaaaataataaacgacataagagttatgagaccaaattgaaacactttatagttagggga 55952870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 42356 - 42431
Alignment:
Q  193 accaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    ||||||| |||||||||||||| | |||||| | |||||||| |||| ||||||||||||||| ||||||||||||    
T  42356 accaaaatagtaaacgacagaagatttatgggatcaaattgatacacgtaatagttaagggatcaaactgagaaaa 42431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 1989 - 1901
Alignment:
Q  63 aatagaaatgattatatgttgtgggttcattgaatatttgtgtgctttctaaatccagccattgatcaccactcttaaatgacacgtgg 151  Q
    ||||||||||||||||||||||| | |||||| ||| |||||| ||||  ||||| |||| ||||||  || |||||||||||| ||||    
T  1989 aatagaaatgattatatgttgtgagctcattgtatacttgtgtacttttcaaatctagcccttgatcttcaatcttaaatgacatgtgg 1901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 77180 - 77247
Alignment:
Q  182 taacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagtta 249  Q
    |||||||||  ||||||||||||||||  |||||| |||||| ||||||||||||| ||| |||||||    
T  77180 taacggagaagaccaaaacagtaaacggtagaatatttatgggaccaaattgaaacgctttatagtta 77247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 626 - 699
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| |||||||  ||||||| ||||| | |||||| || ||||||| |||||| ||||||| ||||    
T  626 ctaacggagatgaccaaaatggtaaacggcagaagatttatgggactaaattgagacactttatagttagggga 699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 648 - 575
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| |||||||  ||||||| ||||| | |||||| || ||||||| |||||| ||||||| ||||    
T  648 ctaacggagatgaccaaaatggtaaacggcagaagatttatgggactaaattgagacactttatagttagggga 575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 13028 - 12955
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    |||| |||||||||||||| | ||||||||| |||| |||||  |||||||||| |||||| ||| ||| ||||    
T  13028 ctaatggagattaccaaaatactaaacgacaaaatatttatgagaccaaattgagacactttataattatggga 12955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 9476 - 9549
Alignment:
Q  181 ctaacggagattaccaaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaaggga 254  Q
    ||||||||||| |||||||  ||||||| ||||| | |||||| || ||||||| |||||| ||||||| ||||    
T  9476 ctaacggagatgaccaaaatggtaaacggcagaagatttatgggactaaattgagacactttatagttagggga 9549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 17173 - 17245
Alignment:
Q  196 aaaacagtaaacgacagaatagttatggaaccaaattgaaacacttaatagttaagggatgaaactgagaaaa 268  Q
    |||| |||||| ||||||| |||||| | |  ||||||| |||||||||||||||||||  ||||||| ||||    
T  17173 aaaatagtaaatgacagaagagttattggattaaattgagacacttaatagttaagggaccaaactgaaaaaa 17245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University