View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_24 (Length: 279)
Name: NF13427_high_24
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 2178675 - 2178423
Alignment:
| Q |
1 |
tgggtgcactttcaatctatcattgcataccttctaatcttcaagaatttcaagaagatacatttcttaaataattactacatggtttatttacttgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178675 |
tgggtgcactttcaatctatcattgcataccttctaatcttctagaatttcaagaagatacatttcttaaataattactacatggtttattta------- |
2178583 |
T |
|
| Q |
101 |
tttacttgcgatcaaatacatatctaattatgtccgacactaacacgacatgacacatgagtttatattcgattaatagacgtgtgcatgatagttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178582 |
tttacttgcgatcaaatacatatctaat---gtccgacactaacacgacatgacacatgagtttatattcgattaatagacgtgtgcatgatagttgtgt |
2178486 |
T |
|
| Q |
201 |
gagatagcctcaaagtagctatgccatcacactagacttaattgcatggcgaatgaattaagt |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178485 |
gagatagcctcaaagtagctatgccatcacactagacttaattgcatggcgaatgaattaagt |
2178423 |
T |
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