View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_3 (Length: 599)
Name: NF13427_high_3
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 4765591 - 4765010
Alignment:
| Q |
1 |
aatatccataaggataggattattcccttacatatatataccataagagtaagatgaaataaaccagaagcataaatggtgtcatatgtacctcaataac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765591 |
aatatccataaggataggattattcccttacatatatataccataagagtaagatgaaataaaccagaagcataaatggtgtcatatgtacctcaataac |
4765492 |
T |
|
| Q |
101 |
aaccctgacaactcaaaggttgtcatgtgttagatgtatattccctacctaaaatgttgtttctcttcattaagaatattttttctgacattccataact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765491 |
aaccctgacaactcaaaggttgtcatgtgttagatgtatattccctacctaaaatgttttttctcttcattaagaatattttttctgacattccataact |
4765392 |
T |
|
| Q |
201 |
cactttttgctatagcatattatggattcacactgtttgtaaaacattatttatatggttagatttataaatgaggtacttaatagttgatacacaacat |
300 |
Q |
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| T |
4765391 |
cactttttgctataccatattatggattcacactgtttgtaaaacattatttatgtggttagatttataaatgaggtacttaatagttgatacacaacat |
4765292 |
T |
|
| Q |
301 |
cgatgtatgtctaatgcgaaactgtgatttacagttaaacgtcattgctaaccaataactgaacaacaaattataaattgtaacgaacgttgactctttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4765291 |
cgatgtatgtctaatgcgaaactgtgatttacagttaaacgtcattgctaaccaataactgaacaacaaattataatttgtaacgaacgttgactctttc |
4765192 |
T |
|
| Q |
401 |
aatgaatttttcctcatgccttgcacgagttcacggtactagtattgtagaatataattatttttaaaaaattaccgaaagtaaagaagcaagtgttgga |
500 |
Q |
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| T |
4765191 |
aatgaatttttcctcatgccttgcacgagttcacggtactagtattgtagaatataattatttttaaaaaattaccgaaagtaaagaagaaagtgttgga |
4765092 |
T |
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| Q |
501 |
aaactctgagttgatgagtacttttatacaactgattacaaatgcatccttatttattacacataataaataacctgctgtg |
582 |
Q |
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| T |
4765091 |
aaactctgagttgatgagtacttttatacaactgattacaaatgcatccttatttattacacataataaataacctgctgtg |
4765010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 8935413 - 8935312
Alignment:
| Q |
285 |
agttgatacacaacatcgatgtatgtctaatgcgaaactgtgatttacagttaaacgtcattgctaaccaataactga--acaacaaattataaattgta |
382 |
Q |
| |
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| T |
8935413 |
agttgatacacgacattgatatatgcctaatgtgaaactacgatttactgttaaatgtcattgctgctcaataaatgaacacaacacattataaattgta |
8935314 |
T |
|
| Q |
383 |
ac |
384 |
Q |
| |
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|| |
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|
| T |
8935313 |
ac |
8935312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 30050772 - 30050844
Alignment:
| Q |
259 |
ttagatttataaatgaggtacttaatagttgatacacaacatcgatgtatgtctaatgcgaaactgtgattta |
331 |
Q |
| |
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|||| ||||| || || |||||||| ||| |||||||||||| |||||||| ||||||| | | ||||||||| |
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| T |
30050772 |
ttagctttatgaaagatgtacttaacagtcgatacacaacattgatgtatgcctaatgctatattgtgattta |
30050844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 4974284 - 4974335
Alignment:
| Q |
266 |
tataaatgaggtacttaatagttgatacacaacatcgatgtatgtctaatgc |
317 |
Q |
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| T |
4974284 |
tataaaagagatacttaatagttgatacataacattaatgtatgtctaatgc |
4974335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 4992192 - 4992243
Alignment:
| Q |
266 |
tataaatgaggtacttaatagttgatacacaacatcgatgtatgtctaatgc |
317 |
Q |
| |
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|||||| ||| |||||||||||||||||| ||||| ||||||||||||||| |
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| T |
4992192 |
tataaaagagatacttaatagttgatacataacattaatgtatgtctaatgc |
4992243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 28843260 - 28843302
Alignment:
| Q |
254 |
tatggttagatttataaatgaggtacttaatagttgatacaca |
296 |
Q |
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| T |
28843260 |
tatgtttagatttataaaagaggtacttaacagttgatacaca |
28843302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 35780768 - 35780851
Alignment:
| Q |
122 |
gtcatgtgttagatgtatattccctacctaaaatgttgtttctcttcattaagaat-attttttctgacattccataactcactttt |
207 |
Q |
| |
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|||||||||||||||| |||||||||||| |||| |||| |||| ||||| || ||||||| ||||||||||| ||||| |||| |
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| T |
35780768 |
gtcatgtgttagatgtgtattccctaccttaaattgtgttgctct---ttaagtataattttttttgacattccattactcaatttt |
35780851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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