View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_30 (Length: 235)
Name: NF13427_high_30
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 18101567 - 18101785
Alignment:
| Q |
1 |
cttgttttaaattttataccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctctgtgtttatattcttgttggataatgatatat |
100 |
Q |
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| T |
18101567 |
cttgtttgaaattttataccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctttgtttttatattctttttggataatgatatat |
18101666 |
T |
|
| Q |
101 |
aatttggttggttaacttggtcctaaacaacactacaccaccnnnnnnntaaacaccagtcgtattcgtcgtgagtaatgaatgacgctcatccgatgga |
200 |
Q |
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| T |
18101667 |
aatttggttggttaacttagtcctaaacaacactacaccaccaaaaaaataaacacatgtcgtattcgtcgtgagtaatgaatgacgctcagccgatgga |
18101766 |
T |
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| Q |
201 |
tcaagaagagtcacatacc |
219 |
Q |
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||||||||||||||||||| |
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| T |
18101767 |
tcaagaagagtcacatacc |
18101785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 37859175 - 37859393
Alignment:
| Q |
1 |
cttgttttaaattttataccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctctgtgtttatattcttgttggataatgatatat |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
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| T |
37859175 |
cttgtttgaaattttataccaatcagaactttgatacatctatgaatcaatgtctgtcttcaagtctttgtttttatattctttttggataatgatatat |
37859274 |
T |
|
| Q |
101 |
aatttggttggttaacttggtcctaaacaacactacaccaccnnnnnnntaaacaccagtcgtattcgtcgtgagtaatgaatgacgctcatccgatgga |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37859275 |
aatttggttggttaacttagtcctaaacaacactacaccaccaaaaaaataaacacatgtcgtattcgtcgtgagtaatgaatgacgctcagccgatgga |
37859374 |
T |
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| Q |
201 |
tcaagaagagtcacatacc |
219 |
Q |
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||||||||||||||||||| |
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| T |
37859375 |
tcaagaagagtcacatacc |
37859393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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