View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_33 (Length: 204)
Name: NF13427_high_33
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 17986666 - 17986488
Alignment:
| Q |
13 |
gaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagtt |
112 |
Q |
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| T |
17986666 |
gaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgatcaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagtt |
17986567 |
T |
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| Q |
113 |
cctttagtggcctctgatggaactaaagcgaaggcactaacgatatgccaccatgacacgagaggtatggatcctgatg |
191 |
Q |
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| T |
17986566 |
cctttagtggcctctgatggaactaaagcgaaggcactaacaatatgccaccatgacacgagaggtatggatcctgatg |
17986488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 17107412 - 17107590
Alignment:
| Q |
13 |
gaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagtt |
112 |
Q |
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| T |
17107412 |
gaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtg |
17107511 |
T |
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| Q |
113 |
cctttagtggcctctgatggaactaaagcgaaggcactaacgatatgccaccatgacacgagaggtatggatcctgatg |
191 |
Q |
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| T |
17107512 |
ctattggtggcttctgatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatg |
17107590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 17004234 - 17004395
Alignment:
| Q |
17 |
aaaattggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagttcctt |
116 |
Q |
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| T |
17004234 |
aaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagttaatgcaactacaacttacatggtgccat |
17004333 |
T |
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| Q |
117 |
tagtggcctctgatggaactaaagcgaaggcactaacgatatgccaccatgacacgagaggt |
178 |
Q |
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| T |
17004334 |
tggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggt |
17004395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 17945502 - 17945332
Alignment:
| Q |
17 |
aaaattggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagttcctt |
116 |
Q |
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||||| |||||||| || ||||||||||||| | | ||| | || | |||| ||| ||||||||||| |||| || ||| | || ||||| ||||| | |
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| T |
17945502 |
aaaataggagacaacgcagtgatgtgtcatagaatgaatcttaaaaaggttggattctattgccaccagatcaacgcgacaacgacttacatggttccat |
17945403 |
T |
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| Q |
117 |
tagtggcctctgatggaactaaagcgaaggcactaacgatatgccaccatgacacgagaggtatggatcct |
187 |
Q |
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| T |
17945402 |
tggtggcctctgatggaactaaatccaaggcactaactatctgccaccatgatacaagaggtatggatcct |
17945332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 17956500 - 17956330
Alignment:
| Q |
17 |
aaaattggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagttcctt |
116 |
Q |
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||||| |||||||| || |||||||| |||| | | ||||| || ||||| |||| |||||||||||||||||||| ||| |||| ||||| ||||| | |
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| T |
17956500 |
aaaataggagacaacgcagtgatgtgccatagattgaattttaaaaaagttctattctattgccaccaagtcaatgcgacaacaacttacatggttccat |
17956401 |
T |
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| Q |
117 |
tagtggcctctgatggaactaaagcgaaggcactaacgatatgccaccatgacacgagaggtatggatcct |
187 |
Q |
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| T |
17956400 |
tggtggcatccgatggaaccaaatctaaggcactaacaatctgtcaccatgatactcgaggtatggatcct |
17956330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 17117418 - 17117241
Alignment:
| Q |
13 |
gaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagtt |
112 |
Q |
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|||||||||||||||||| || ||| |||||||| | | |||||| || | || |||||| ||| |||||||| ||||||||| || ||||| || |
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| T |
17117418 |
gaagaaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtg |
17117319 |
T |
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| Q |
113 |
cctttagtggcctctgatggaactaaagcgaaggcactaacgatatgccaccatgacacgagaggtatggatcctgat |
190 |
Q |
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| T |
17117318 |
ccattggtggcttctgatggaactaaagctaaggcagtgactatttgtcaccatgatacaagaggtatgaatcctgat |
17117241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 17999450 - 17999326
Alignment:
| Q |
16 |
gaaaattggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagttcct |
115 |
Q |
| |
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|||||||| |||||||| || ||||||||| | | |||||||| |||||||||||||||| |||||||| |||||| || |||| ||||| || ||| |
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| T |
17999450 |
gaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatcaacaacttacatggtccct |
17999351 |
T |
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| Q |
116 |
ttagtggcctctgatggaactaaag |
140 |
Q |
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|| ||||||||||||||| ||||| |
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| T |
17999350 |
ttgttggcctctgatggaagtaaag |
17999326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 17258256 - 17258190
Alignment:
| Q |
21 |
ttggagacaaagccgtgatgtgtcataaactaaatttcgaacaagttgtattttattgccaccaagt |
87 |
Q |
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| T |
17258256 |
ttggagacaatgcagtgatgtgtcatagattgaatttcgaaaaagttgtattcaattgccaccaagt |
17258190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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