View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_high_6 (Length: 566)
Name: NF13427_high_6
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 49054623 - 49055046
Alignment:
| Q |
1 |
acccttgcatcaagtagaaaaacattttatttgaaaaacgggatattacaatgatctacaacaattttcgtagtgatgtaaccttaagggaagagtagcc |
100 |
Q |
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| T |
49054623 |
acccttgcatcaagtagaaaaacattttatttgaaaaacgggatattacaatgatctacaacaattttcgtagtgatgtaaccttaagggccaagtagcc |
49054722 |
T |
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| Q |
101 |
atgatgaatgatttaatttgttcccttatgtttaataaacaaattgattcagatgaaactcaaaatagacaaaattagttatctataggaaatttaccat |
200 |
Q |
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| T |
49054723 |
atgatgaatgatttaatttgttcccttatgtttaacaaacaaattgattcagatgaaactcaaaatagacaaaattagttatctataggaaatttaccat |
49054822 |
T |
|
| Q |
201 |
agataaggagattatgaagtaaaggccataaccgcttatgttataacagttgttacagtttagttagttagtttcaaatactgctttgttgatctcttat |
300 |
Q |
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| T |
49054823 |
agataaggagattatgaagtaaaggccataaccgcttatgttataacagttgttacagtttagttagttagtttcaaatactgctttgttgatctcttat |
49054922 |
T |
|
| Q |
301 |
tcaggatatcatcattctaaatgaagaatgtatgcggcctaacttttaattaacactttttgattcatagaatggaaaataaaatagttattattggctg |
400 |
Q |
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| T |
49054923 |
tcaggatatcatcattctaaatgaagaatgtatgcggcctaacttttaattaacactttttgattcatagaatggaaaataaaatagttattattggctg |
49055022 |
T |
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| Q |
401 |
caatgcaatgcaagtcaagtcttg |
424 |
Q |
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| T |
49055023 |
caatgcaatgcaagtcaagtcttg |
49055046 |
T |
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