View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13427_high_9 (Length: 408)
Name: NF13427_high_9
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 25 - 395
Target Start/End: Original strand, 6586962 - 6587332
Alignment:
| Q |
25 |
attctgccatttttctttaaacnnnnnnnatagaaccatcaaataaaaaggatcttaagttaatagttttcactaacaataacagatatcaacattaacc |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6586962 |
attctgccatttttctttaaactttttttatagaaccatcaaataaaaaggatgttaagttcatagttttcactaacaataacagatatcaacattaaac |
6587061 |
T |
|
| Q |
125 |
ggtttaattttaaatcatccctagggaacttttgctggtgttaggccttgctgtactctaatttaatagggatctggttagagtttcacccacatgcacc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6587062 |
ggtttaattttaaatcatccctagggaacttttgctggtgttaggccttgctgtactctaatttaatagggatctggttagagtttcacccacatgcacc |
6587161 |
T |
|
| Q |
225 |
ggttcttaatgaattcatgttagaattctgttaacaagataactgaatcagtcatcctaattaaaccttacatatagtggcaatccttgttattaggttc |
324 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6587162 |
ggttcttaatgaattcttgttagaattctgttaacaagataactgaatcagtcatcctaattaaaccttacatatagtggcaatccttgttattaggttc |
6587261 |
T |
|
| Q |
325 |
ttaaatgttttcttgttagaattctgtttaagttgagctttagtgtccttttataggttaatttaattatt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6587262 |
ttaaatgttttcttgttagaattctgtttaagttgagctttagtgtccttttataggttaatttaattatt |
6587332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 6436659 - 6436578
Alignment:
| Q |
89 |
agttttcactaacaataacagatatcaacattaaccggtttaatt-ttaaatcatccctagggaacttttgctggtgttagg |
169 |
Q |
| |
|
||||||||| || ||||| ||||||||||| | ||| |||||||| |||||| ||| ||||||||||||| || |||||||| |
|
|
| T |
6436659 |
agttttcacaaataataaaagatatcaacacttacctgtttaattattaaattatcgctagggaactttttcttgtgttagg |
6436578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University