View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_12 (Length: 406)
Name: NF13427_low_12
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 36163470 - 36163858
Alignment:
| Q |
7 |
tgtgtgagtgtgggtgggtgagggtggggattatgcggctgcgcaccctcaaattcagagggtcaccacttatccttgtattttatttcttagactagtg |
106 |
Q |
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| T |
36163470 |
tgtgtgagtgtgggtgggtgagggtggggattatgcggctgcgcaccctcaaattcagagggtcgccactgatccttgtattttatttcttagactagtg |
36163569 |
T |
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| Q |
107 |
ttatattgataagatatagatgtgattatatctctacagttctttaannnnnnnnnnnnnnnngtaagtttgacgtgggtaatttctgagattttgagtg |
206 |
Q |
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| T |
36163570 |
ttatattgataagatacagatgtgattatatctctacagttctttaattttttttttttttttgtaagtttgacgtgggtaatttctgagattttgagtg |
36163669 |
T |
|
| Q |
207 |
tcatgcgtgatgtatgaagtcgatgacctacttttttaaaattaacaaacacgcacgcgcgcatgcaagcacatttattttgtatgtgagagaccaacca |
306 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36163670 |
tcatgcgtgatgtatgaagtcggtgatctacttttttaaaattaacaaacacgcacgcgcgcatgcaagcacatttattttgtgtgtgagagaccaacca |
36163769 |
T |
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| Q |
307 |
aattatttttgtcaacataagcctaaacttgaatgtaaccgtaatgtaaatgtctttttagatttttcttcataatttgaattattcat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36163770 |
aattatttttgtcaacataagcctaaacttgaatgtaaccctaatgtaaatgtctttttggatttttcttcataatttgaattattcat |
36163858 |
T |
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