View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_13 (Length: 406)
Name: NF13427_low_13
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 232 - 388
Target Start/End: Complemental strand, 37711563 - 37711407
Alignment:
| Q |
232 |
ttcattttttataaatagagggacaaatattgcacttacgtaaaacatttttacacatgcatctaatcatctaatcaaattgctttacaatgccactttt |
331 |
Q |
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| T |
37711563 |
ttcattttttataaatagagggaaaaatattgcacttacgtaaaacatttttacacatgcatctaatcatctaatcaaattgctttacaatgccactttt |
37711464 |
T |
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| Q |
332 |
ataacatagtttccaaaatatcttgacaaaaatctatacaacctgatttgattaaat |
388 |
Q |
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| T |
37711463 |
ataacatagtttccaaaatatcttgacaaaaatctatacaacctgatttgattaaat |
37711407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 37711778 - 37711660
Alignment:
| Q |
10 |
acatcatcactcaaggatctgagttaaggttctacaagattgttaggctacactaaatatccatgtcagtatataaaagtctaataattgttgacatgtc |
109 |
Q |
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| T |
37711778 |
acatcatcactcaaggatctgagttaaggttctacaagatcgttagactacgctaaatatccatgtcaatatataaaa----aataattgttgacatgtc |
37711683 |
T |
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| Q |
110 |
ataaatgaataagtcatgttatt |
132 |
Q |
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| T |
37711682 |
ataaatgaataagtcatgttatt |
37711660 |
T |
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