View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13427_low_14 (Length: 404)

Name: NF13427_low_14
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13427_low_14
NF13427_low_14
[»] chr2 (12 HSPs)
chr2 (43-386)||(44475394-44475740)
chr2 (254-306)||(7480854-7480906)
chr2 (210-306)||(4026964-4027056)
chr2 (308-376)||(44485613-44485681)
chr2 (254-306)||(8832536-8832588)
chr2 (254-306)||(23956219-23956271)
chr2 (254-306)||(38216098-38216150)
chr2 (254-305)||(736043-736094)
chr2 (255-306)||(29774825-29774876)
chr2 (254-306)||(887491-887543)
chr2 (254-306)||(11777063-11777115)
chr2 (270-306)||(35235200-35235236)
[»] chr4 (29 HSPs)
chr4 (210-306)||(488339-488431)
chr4 (254-305)||(36254992-36255043)
chr4 (218-306)||(38345777-38345861)
chr4 (256-306)||(8130560-8130610)
chr4 (210-304)||(23335681-23335771)
chr4 (254-306)||(12495599-12495651)
chr4 (254-306)||(17222908-17222960)
chr4 (254-306)||(29877718-29877770)
chr4 (255-306)||(34633470-34633521)
chr4 (255-306)||(43699404-43699455)
chr4 (257-306)||(14987555-14987604)
chr4 (254-295)||(32628857-32628898)
chr4 (254-306)||(11256616-11256668)
chr4 (254-306)||(18424233-18424285)
chr4 (254-306)||(22273859-22273911)
chr4 (254-306)||(23297514-23297566)
chr4 (254-306)||(34526292-34526344)
chr4 (254-306)||(36740983-36741035)
chr4 (254-306)||(48687013-48687065)
chr4 (254-306)||(48721899-48721951)
chr4 (255-306)||(24101895-24101946)
chr4 (254-301)||(29615439-29615486)
chr4 (255-302)||(33534008-33534055)
chr4 (210-306)||(41228942-41229034)
chr4 (254-303)||(15184625-15184674)
chr4 (254-306)||(825761-825813)
chr4 (254-306)||(23284746-23284798)
chr4 (254-306)||(46704225-46704277)
chr4 (254-306)||(48591379-48591431)
[»] chr6 (15 HSPs)
chr6 (226-306)||(32675844-32675920)
chr6 (254-306)||(9202354-9202406)
chr6 (269-306)||(7267876-7267913)
chr6 (254-306)||(2255813-2255865)
chr6 (210-306)||(6758666-6758759)
chr6 (267-306)||(9201676-9201715)
chr6 (256-306)||(2040136-2040186)
chr6 (252-306)||(10755238-10755292)
chr6 (254-306)||(6752891-6752943)
chr6 (254-306)||(10054458-10054510)
chr6 (254-306)||(10874063-10874115)
chr6 (254-306)||(23239326-23239378)
chr6 (254-306)||(32165216-32165268)
chr6 (270-306)||(35071383-35071419)
chr6 (254-306)||(35111305-35111357)
[»] chr7 (16 HSPs)
chr7 (254-306)||(46744032-46744084)
chr7 (256-306)||(43818833-43818883)
chr7 (210-306)||(44613428-44613520)
chr7 (256-306)||(47654369-47654419)
chr7 (254-306)||(33288030-33288082)
chr7 (210-306)||(14691254-14691346)
chr7 (267-306)||(33204926-33204965)
chr7 (256-306)||(22032843-22032893)
chr7 (255-305)||(23356447-23356497)
chr7 (254-304)||(48021605-48021655)
chr7 (260-306)||(49104323-49104369)
chr7 (261-306)||(30181636-30181681)
chr7 (257-306)||(38372640-38372689)
chr7 (254-306)||(1401152-1401204)
chr7 (254-306)||(29378724-29378776)
chr7 (254-306)||(34923012-34923064)
[»] chr5 (33 HSPs)
chr5 (210-295)||(1576669-1576750)
chr5 (210-295)||(1608065-1608146)
chr5 (210-306)||(41419540-41419632)
chr5 (256-306)||(29659141-29659191)
chr5 (254-306)||(1943074-1943126)
chr5 (254-306)||(11912057-11912109)
chr5 (254-306)||(24030293-24030345)
chr5 (258-306)||(28357435-28357483)
chr5 (254-306)||(43268591-43268643)
chr5 (210-306)||(28625519-28625611)
chr5 (255-304)||(42852101-42852150)
chr5 (255-295)||(6150872-6150912)
chr5 (254-306)||(7364264-7364316)
chr5 (254-306)||(11163237-11163289)
chr5 (256-304)||(23087736-23087784)
chr5 (258-306)||(39154716-39154764)
chr5 (258-306)||(41059744-41059792)
chr5 (259-306)||(10274384-10274431)
chr5 (267-306)||(13060557-13060596)
chr5 (255-306)||(29922144-29922195)
chr5 (259-306)||(35083323-35083370)
chr5 (256-306)||(9477417-9477467)
chr5 (254-296)||(10537192-10537234)
chr5 (254-306)||(41125752-41125805)
chr5 (267-304)||(43319095-43319132)
chr5 (255-306)||(2577383-2577435)
chr5 (254-306)||(2878632-2878684)
chr5 (262-306)||(3977560-3977604)
chr5 (254-306)||(5559874-5559926)
chr5 (254-306)||(17657321-17657373)
chr5 (254-306)||(27805994-27806046)
chr5 (254-306)||(40697085-40697137)
chr5 (267-303)||(41534724-41534760)
[»] chr3 (15 HSPs)
chr3 (254-306)||(34707668-34707720)
chr3 (220-306)||(20685834-20685916)
chr3 (254-306)||(1516053-1516105)
chr3 (254-306)||(42956134-42956186)
chr3 (257-306)||(40581031-40581080)
chr3 (210-295)||(3870192-3870273)
chr3 (254-306)||(29830594-29830646)
chr3 (254-306)||(37778212-37778264)
chr3 (254-306)||(53787707-53787759)
chr3 (267-306)||(10449069-10449108)
chr3 (210-306)||(22809148-22809240)
chr3 (223-306)||(40240532-40240611)
chr3 (256-306)||(52895360-52895410)
chr3 (254-306)||(7124650-7124702)
chr3 (254-302)||(29830717-29830765)
[»] chr1 (20 HSPs)
chr1 (210-307)||(3069808-3069901)
chr1 (210-306)||(48819338-48819430)
chr1 (210-303)||(6337714-6337803)
chr1 (254-306)||(22593362-22593414)
chr1 (254-306)||(28690083-28690135)
chr1 (210-306)||(15515302-15515394)
chr1 (210-306)||(41196665-41196757)
chr1 (254-306)||(14460996-14461048)
chr1 (254-306)||(16888921-16888973)
chr1 (254-306)||(41003466-41003518)
chr1 (254-306)||(41130073-41130125)
chr1 (255-306)||(16708879-16708930)
chr1 (254-304)||(12871432-12871482)
chr1 (254-306)||(391254-391307)
chr1 (261-306)||(9572739-9572784)
chr1 (257-306)||(38781160-38781209)
chr1 (254-306)||(1005419-1005471)
chr1 (258-306)||(28870286-28870334)
chr1 (254-306)||(37329367-37329419)
chr1 (254-306)||(51477773-51477825)
[»] scaffold0157 (1 HSPs)
scaffold0157 (254-306)||(24826-24878)
[»] chr8 (19 HSPs)
chr8 (210-306)||(32975726-32975818)
chr8 (223-303)||(14262378-14262454)
chr8 (257-306)||(10213777-10213826)
chr8 (254-306)||(8752885-8752937)
chr8 (210-295)||(10298892-10298973)
chr8 (254-306)||(25333656-25333708)
chr8 (254-306)||(25465802-25465854)
chr8 (262-306)||(28280796-28280840)
chr8 (254-306)||(32131519-32131571)
chr8 (254-306)||(41145351-41145403)
chr8 (267-306)||(16926683-16926722)
chr8 (210-306)||(24350474-24350566)
chr8 (210-306)||(38895698-38895790)
chr8 (223-295)||(2563410-2563478)
chr8 (257-306)||(32212970-32213019)
chr8 (254-306)||(19925636-19925688)
chr8 (254-306)||(34286519-34286571)
chr8 (254-306)||(35286007-35286059)
chr8 (254-306)||(42363272-42363324)
[»] scaffold0015 (1 HSPs)
scaffold0015 (256-306)||(48583-48633)
[»] scaffold0024 (1 HSPs)
scaffold0024 (252-296)||(97174-97218)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 43 - 386
Target Start/End: Complemental strand, 44475740 - 44475394
Alignment:
Q  43 caaagttgaagaaaaataattacacgggctgaatggtttgattgagnnnnnnntacagcaaatcaacattgtcatcggtttatcgaaagcaatatgtgtt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  44475740 caaagttgaagaaaaataattacacgggctgaatggtttgattgagaaaaaaatacagcaaatcaacattgtcatcggtttatcgaaagcaatatgtgtt 44475641  T
Q  143 atttgacgccaaataaatgtagaagctcattagctatcattatattctttgatgaatcg--agatacat------taagcttatcaatgtagtttatgaa 234  Q
    ||||||||| ||||||||| |||| ||||||||||||||||     |||||||||||||  ||||| ||      |||||||||||||||||||||||||    
T  44475640 atttgacgctaaataaatgcagaaactcattagctatcatt-----ctttgatgaatcgcgagataaatgattcataagcttatcaatgtagtttatgaa 44475546  T
Q  235 aaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttattgcaattatagatgccagagggaacgccg 334  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44475545 aaaacaacttctgatcaatgatacaattttcattagtgagaacttacgaattaacataaaaacttatttattgcaattatagatgccagagggaacgccg 44475446  T
Q  335 aaaggaattaagtagttgaagttgaatgttacaggagggtagccatcgttgt 386  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  44475445 aaaggaatcaagtagttgaagttgaatgttataggagggtagccatcgttgt 44475394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7480906 - 7480854
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  7480906 gatacaattttcattagtcagaacttatgaattaacataaaaacttatttatt 7480854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 4026964 - 4027056
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| |||||||||||||||| | ||| |||     |||||||||||| |||||||||||||| |||||||||||| | ||||||||||    
T  4026964 taagcttgtcaaggtagtttatgaaaaaacagcttatgaa----gatacaatttttgttagtgagaacttatgaattaacataatagcttatttatt 4027056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 44485681 - 44485613
Alignment:
Q  308 caattatagatgccagagggaacgccgaaaggaattaagtagttgaagttgaatgttacaggagggtag 376  Q
    ||||||| ||| || |||||||| ||  ||||||| |||||||||||||||||||| ||||||||||||    
T  44485681 caattattgataccggagggaacacccgaaggaatgaagtagttgaagttgaatgtaacaggagggtag 44485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 8832536 - 8832588
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||| |||||| |||||||||||||| ||||||||||    
T  8832536 gatacaattttcgttagtgaaaacttatgaattaacataaaagcttatttatt 8832588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 23956271 - 23956219
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||| ||||||||||  ||||||||||||||||||||||||    
T  23956271 gatacaattttcgttaatgagaacttataaattaacataaaaacttatttatt 23956219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 38216098 - 38216150
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||||||||||||| || ||||||||||| ||||||||||    
T  38216098 gatacaattttcgttagtgagaacttatgagttaacataaaagcttatttatt 38216150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 736043 - 736094
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttat 305  Q
    |||| ||||||| ||| ||||||||||  |||||||||||||||||||||||    
T  736043 gatataatttttgttattgagaacttataaattaacataaaaacttatttat 736094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 29774825 - 29774876
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||  |||||||||||||| |||||||| ||||| ||||||||||    
T  29774825 atacaattttcgttagtgagaacttatgaattaacgtaaaagcttatttatt 29774876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 887491 - 887543
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |||||  |||||||| |||||||||||||| ||||| ||||    
T  887491 gatacaattttcattagcaagaacttatgaattaacataaaagcttatctatt 887543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 11777063 - 11777115
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||| ||||| ||||||||||||||  || |||||||||| ||||||||||    
T  11777063 gatacactttttgttagtgagaacttataaactaacataaaaccttatttatt 11777115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 35235200 - 35235236
Alignment:
Q  270 gtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  35235200 gtgagaacttatgaattaacataaaatcttatttatt 35235236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 488431 - 488339
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| |||||||||||||||||  ||| |    || ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  488431 taagcttgtcaaggtagtttatgaaaaaattgcttgt----aaagatacaatttttattagtgagaacttatgaattaacataaaagcttatttatt 488339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 36255043 - 36254992
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttat 305  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  36255043 gatacaattttaattagtgagaacttatgaattaacataaaagcttatttat 36254992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 38345861 - 38345777
Alignment:
Q  218 tcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| |||||||||||||||| ||||| |||     |||||||||||||||||  |||||||| |||||||||||||| ||||||||||    
T  38345861 tcaaagtagtttatgaaaaaacaacttatgaa----gatacaatttttattagccagaacttatgaattaacataaaagcttatttatt 38345777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 8130560 - 8130610
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  8130560 tacaatttttgttagtgaaaacttatgaattaacataaaaacttatttatt 8130610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 23335681 - 23335771
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttattta 304  Q
    ||||| |||||| |||||||||||||||| | ||| |||     ||||||||||| || |||||||||||| |||||||||||||||||| ||||    
T  23335681 taagcatatcaaggtagtttatgaaaaaacagcttatgaa----gatacaattttcataagtgagaacttatgaattaacataaaaacttgttta 23335771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 12495651 - 12495599
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||| || |||||||||||||||  ||||||||||||||||||||||||    
T  12495651 gatacaatattcattagtgagaacttataaattaacataaaaacttatttatt 12495599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 17222908 - 17222960
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||| |||||||| |||||||||||||||||||||||||    
T  17222908 gatacaattttcgttagttagaacttatgaattaacataaaaacttatttatt 17222960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 29877718 - 29877770
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||| ||||    
T  29877718 gatacaatttttgttagtgagaacttatgaattaacataaaagcttatatatt 29877770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 34633470 - 34633521
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||| || |||||||||||| |||||||||||||| ||||||||||    
T  34633470 atacaattttcataagtgagaacttatgaattaacataaaagcttatttatt 34633521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 43699455 - 43699404
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||| | ||||| ||||||| |||||||||||||||||||||||||    
T  43699455 atacaattttcactagtgggaacttatgaattaacataaaaacttatttatt 43699404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 14987604 - 14987555
Alignment:
Q  257 acaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||  |||||||||||||| ||||||| |||||||||||||||||    
T  14987604 acaattttcgttagtgagaacttatgaattaatataaaaacttatttatt 14987555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 32628857 - 32628898
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaa 295  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  32628857 gatacaattttgatcagtgagaacttacgaattaacataaaa 32628898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 11256668 - 11256616
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||| ||||||||| |||||||||||||| ||||||||||    
T  11256668 gatacaattttagttagcgagaacttatgaattaacataaaagcttatttatt 11256616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 18424285 - 18424233
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||| ||| |||||| |||||||||||||| ||||||||||    
T  18424285 gatacaatttttgttattgaaaacttatgaattaacataaaagcttatttatt 18424233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 22273859 - 22273911
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| |||||||||| ||| ||||||||||||||  |||||||||    
T  22273859 gatacaatttttgttagtgagaagttatgaattaacataaaagtttatttatt 22273911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 23297514 - 23297566
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| |||| ||||||||| |||||| ||||||| ||||||||||    
T  23297514 gatacaatttttgttagcgagaacttatgaattagcataaaagcttatttatt 23297566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 34526344 - 34526292
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||   ||||||||||||| |||||||||||||| ||||||||||    
T  34526344 gatacaattttccatagtgagaacttatgaattaacataaaagcttatttatt 34526292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 36740983 - 36741035
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| ||||||||||||||| |||| |||| |||| ||||||||||    
T  36740983 gatacaattttcattagtgagaacttatgaatcaacacaaaagcttatttatt 36741035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 48687013 - 48687065
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||  |||||||||    
T  48687013 gatacaattttcattagtgagaacttatgaattaacatataagtttatttatt 48687065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 48721899 - 48721951
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| ||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  48721899 gatataatttttgttagtgagaacttatgaattaatataaaagcttatttatt 48721951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 24101946 - 24101895
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |  |||||||||||  ||||||||||||||||||||||||    
T  24101946 atacaatttttgtccgtgagaacttataaattaacataaaaacttatttatt 24101895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 29615439 - 29615486
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttat 301  Q
    |||||||||||| |||||||||||||| |||||| ||||||| |||||    
T  29615439 gatacaatttttgttagtgagaacttaagaattagcataaaagcttat 29615486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 33534008 - 33534055
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatt 302  Q
    ||||||||||  |||||||||||||| ||| |||||||||||||||||    
T  33534008 atacaattttcgttagtgagaacttatgaactaacataaaaacttatt 33534055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 41228942 - 41229034
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| | || |||||||||||||||| ||||   ||| || ||||||||||| |||||| |||||||| ||||||| |||||| || |||||||    
T  41228942 taagcttgttaaggtagtttatgaaaaaacaact---gatgaa-gatacaattttcattagttagaacttatgaattaatataaaagctaatttatt 41229034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 15184625 - 15184674
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttattt 303  Q
    |||||||||||  ||||||||||||||  |||||| ||||||||||||||    
T  15184625 gatacaattttcgttagtgagaacttataaattaaaataaaaacttattt 15184674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 825761 - 825813
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||| ||||| ||||||| | |||| |||||||||||||| ||||||||||    
T  825761 gatacattttttgttagtgaaagcttatgaattaacataaaatcttatttatt 825813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 23284798 - 23284746
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||||| ||||  |||||| |||||||||||||||||    
T  23284798 gatacaattttcgttagtgagagcttataaattaaaataaaaacttatttatt 23284746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 46704277 - 46704225
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| |||||| ||||||||||||||| ||||||| ||||||| ||| |||||    
T  46704277 gataaaattttcattagtgagaacttatgaattaatataaaaagttacttatt 46704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 48591431 - 48591379
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||| |||||||||| |||||||| ||||| ||||||||||    
T  48591431 gatacaattttcgttaatgagaacttatgaattaacgtaaaagcttatttatt 48591379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 32675920 - 32675844
Alignment:
Q  226 gtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||||||||||| |||     ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  32675920 gtttatgaaaaaataacttatgaa----gatacaattttcattagtgagaacttatgaattaatataaaaacttatttatt 32675844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 9202406 - 9202354
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||||||||||    
T  9202406 gatacaatttttattagtgataacttatgaattaacataaaagcttatttatt 9202354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 7267876 - 7267913
Alignment:
Q  269 agtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  7267876 agtgagaacttacgaattaacataaaagcttatttatt 7267913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 2255813 - 2255865
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||||  |||||||||| || |||||||||||||| ||||||||||    
T  2255813 gatacaatttttggtagtgagaacatatgaattaacataaaagcttatttatt 2255865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 6758666 - 6758759
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaa-cttatttatt 306  Q
    ||||||| | || ||||||||||||||| ||||||   ||||| ||||||| |||  |||||||||||||| ||||||| ||||||| ||||||||||    
T  6758666 taagcttgttaaggtagtttatgaaaaattaactt---atcaa-gatacaaatttcgttagtgagaacttatgaattaatataaaaagcttatttatt 6758759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 9201715 - 9201676
Alignment:
Q  267 ttagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  9201715 ttagtgagaacttatgaattaacataaaagcttatttatt 9201676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 2040186 - 2040136
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||| |||||| ||||||||  |||||| |||||||||||||||||    
T  2040186 tacaattttcattagttagaacttataaattaatataaaaacttatttatt 2040136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 10755292 - 10755238
Alignment:
Q  252 atgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| ||||||||  ||||| |||||||| |||||||||||||| ||||||||||    
T  10755292 atgaaacaattttcgttagtaagaacttatgaattaacataaaagcttatttatt 10755238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 6752891 - 6752943
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| ||||||||| | ||| ||||||| |||||| ||||||||||    
T  6752891 gatacaattttcattagtgaggatttatgaattaatataaaagcttatttatt 6752943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 10054458 - 10054510
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| ||||||| |||||||| ||||| ||||||| | ||||||||    
T  10054458 gatacaattttcattagtgggaacttacaaattagcataaaagcctatttatt 10054510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 10874063 - 10874115
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  || |||| |||||| |||||||||||||| ||||||||||    
T  10874063 gatacaattttagttggtgaaaacttatgaattaacataaaagcttatttatt 10874115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 23239326 - 23239378
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||  |||||||||||||| ||||||| |||||| ||||||||||    
T  23239326 gatacaactttccttagtgagaacttatgaattaatataaaagcttatttatt 23239378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 32165268 - 32165216
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||||| ||||  |||||| |||||||||||||||||    
T  32165268 gatacaattttcgttagtgagagcttataaattaaaataaaaacttatttatt 32165216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 35071419 - 35071383
Alignment:
Q  270 gtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  35071419 gtgagaacttatgaattaacataaaagcttatttatt 35071383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 35111357 - 35111305
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||| ||||||||||||||||| ||||||  |||||||||    
T  35111357 gatacaattttcgttagcgagaacttacgaattaagataaaagtttatttatt 35111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 46744032 - 46744084
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  46744032 gatacaattttcgttagtgagaacttacgaattaacataaaagcttatttatt 46744084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 43818883 - 43818833
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  43818883 tacaattttcattagtgagaacttatgaattaagataaaaacttatttatt 43818833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 44613520 - 44613428
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| | || |||||||||||||||| ||||| |||     |||||||||||||||| | |||||||| ||||||| |||||| ||||||||||    
T  44613520 taagcttgttaaggtagtttatgaaaaaacaacttatgac----gatacaatttttattaattagaacttatgaattaatataaaagcttatttatt 44613428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 47654419 - 47654369
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||  |||||||||||||| ||||||| |||||||||||||||||    
T  47654419 tacaattttcgttagtgagaacttatgaattaagataaaaacttatttatt 47654369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 33288082 - 33288030
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||| ||||  ||||||| |||||| |||||||||||||||||||||||||    
T  33288082 gatacagttttcgttagtgaaaacttatgaattaacataaaaacttatttatt 33288030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 14691346 - 14691254
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||||||| |||||||||||| || || |||     |||| ||||||  |||||||||||||| ||||||||||||||  |||||||||    
T  14691346 taagcttgtcaatgtaatttatgaaaaaacaatttatgaa----gatataattttcgttagtgagaacttatgaattaacataaaaggttatttatt 14691254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 33204926 - 33204965
Alignment:
Q  267 ttagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  33204926 ttagtgagaacttatgaattaacataaaagcttatttatt 33204965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 22032843 - 22032893
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||  ||||||||||||||  |||||| |||||||||||||||||    
T  22032843 tacaattttcgttagtgagaacttataaattaagataaaaacttatttatt 22032893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 23356497 - 23356447
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatttat 305  Q
    |||| |||||| ||||||||||| || |||||||||||||| |||||||||    
T  23356497 atactatttttgttagtgagaacctatgaattaacataaaagcttatttat 23356447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 48021655 - 48021605
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttattta 304  Q
    ||||||||||| |||||||| |||||| ||||||| ||||||| |||||||    
T  48021655 gatacaattttcattagtgaaaacttatgaattaatataaaaaattattta 48021605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 49104369 - 49104323
Alignment:
Q  260 atttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  49104369 atttttatgagtgagaatttatgaattaacataaaaatttatttatt 49104323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 30181636 - 30181681
Alignment:
Q  261 tttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  30181636 ttttcattagtgggaacttatgaattaacataaaagcttatttatt 30181681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 38372640 - 38372689
Alignment:
Q  257 acaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||  |||||||||||||| |||||||||||||| || |||||||    
T  38372640 acaattttcgttagtgagaacttatgaattaacataaaagctgatttatt 38372689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 1401152 - 1401204
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||| ||||| | ||| |||||||| |||||||||||||| ||||||||||    
T  1401152 gatacactttttgtaagtaagaacttatgaattaacataaaagcttatttatt 1401204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 29378724 - 29378776
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||| |||||||| |||||||| ||||| ||||||||||    
T  29378724 gatacaattttcgttagtaagaacttatgaattaacgtaaaagcttatttatt 29378776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 34923012 - 34923064
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||| ||||  |||||||||||||| ||| |||||||||| ||||||||||    
T  34923012 gatacacttttcgttagtgagaacttatgaactaacataaaagcttatttatt 34923064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 1576669 - 1576750
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaa 295  Q
    ||||||| ||||||||||||||| ||||| ||||| |||     |||||||||||| |||||||||||||| ||||||||||||||    
T  1576669 taagcttgtcaatgtagtttatggaaaaacaacttgtgaa----gatacaatttttgttagtgagaacttaagaattaacataaaa 1576750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 1608146 - 1608065
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaa 295  Q
    ||||||| ||||||||||||||| ||||| ||||| |||     |||||||||||| |||||||||||||| ||||||||||||||    
T  1608146 taagcttgtcaatgtagtttatggaaaaacaacttgtgaa----gatacaatttttgttagtgagaacttaagaattaacataaaa 1608065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 41419540 - 41419632
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| |||||||||||||||| | ||| |||     |||||||||||  ||||||||||||||  ||||||||||||||||||||||||    
T  41419540 taagcttgtcaaggtagtttatgaaaaaacagcttatgaa----gatacaattttcgttagtgagaacttatcaattaacataaaaacttatttatt 41419632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 29659141 - 29659191
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  29659141 tacaattttcattagtgagaacttatgaattaagataaaaacttatttatt 29659191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 1943074 - 1943126
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||    
T  1943074 gatacaattttcattagtgagaacttatgaattagcataaaagcttatttatt 1943126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 11912109 - 11912057
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| |||||||||||||| |||||||||| ||| ||||||||||    
T  11912109 gatacaatttttgttagtgagaacttatgaattaacatgaaagcttatttatt 11912057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 24030293 - 24030345
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||||||||||||| |||||||||||||| ||||||||||    
T  24030293 gatacaattttcgttagtgagaacttatgaattaacataaaagcttatttatt 24030345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 28357435 - 28357483
Alignment:
Q  258 caatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||||    
T  28357435 caattttcgttagtgagaacttacgaattaagataaaaacttatttatt 28357483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 43268643 - 43268591
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||||||||||||||  ||||||||||||| ||||||||||    
T  43268643 gatacaatttttgttagtgagaacttataaattaacataaaagcttatttatt 43268591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 28625519 - 28625611
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| |||||||||||||||| | ||| |||     |||||||||||  ||||||||||| || |||||||||||||| ||||||||||    
T  28625519 taagcttgtcaaggtagtttatgaaaaaacagcttatgaa----gatacaattttcgttagtgagaacctatgaattaacataaaagcttatttatt 28625611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 42852101 - 42852150
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttattta 304  Q
    ||||||||||  |||||||||||||| |||||||||||||| ||||||||    
T  42852101 atacaattttcgttagtgagaacttatgaattaacataaaagcttattta 42852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 6150872 - 6150912
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaa 295  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  6150872 atacaatttttgttactgagaacttacgaattaacataaaa 6150912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7364316 - 7364264
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||| ||| |||||||||||||| ||||||| |||||| ||||||||||    
T  7364316 gatacaatatttgttagtgagaacttatgaattaatataaaagcttatttatt 7364264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 11163289 - 11163237
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||||| ||||||| |||||||||||||| ||||||||||    
T  11163289 gatacaattttcgttagtgcgaacttatgaattaacataaaagcttatttatt 11163237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 23087784 - 23087736
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttattta 304  Q
    |||||||||| |||||||||||||| ||||||| ||||||||| |||||    
T  23087784 tacaatttttgttagtgagaacttatgaattaatataaaaactaattta 23087736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 39154764 - 39154716
Alignment:
Q  258 caatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| |||||||||| ||||||||| |||| ||||||||||    
T  39154764 caatttttattattgagaacttatgaattaacacaaaagcttatttatt 39154716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 41059792 - 41059744
Alignment:
Q  258 caatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||  |||||||||||||| |||||||||||||| ||||||||||    
T  41059792 caattttcgttagtgagaacttatgaattaacataaaagcttatttatt 41059744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 10274384 - 10274431
Alignment:
Q  259 aatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  10274384 aatttttgttaaagagaacttacgaattatcataaaaacttatttatt 10274431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 13060596 - 13060557
Alignment:
Q  267 ttagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  13060596 ttagtgagaacttatgaattaacataaaagcttatttatt 13060557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 29922195 - 29922144
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| ||||||||| |||| ||||||| |||||| ||||||||||    
T  29922195 atacaattttttttagtgagagcttatgaattaatataaaagcttatttatt 29922144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 35083323 - 35083370
Alignment:
Q  259 aatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||| || |||||||||||| |||||||||||||| ||||||||||    
T  35083323 aattttcatcagtgagaacttatgaattaacataaaagcttatttatt 35083370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 9477417 - 9477467
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||  ||| |||||||||| ||||||| |||||||||||||||||    
T  9477417 tacaattttcgttactgagaacttatgaattaagataaaaacttatttatt 9477467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 10537234 - 10537192
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaa 296  Q
    |||||||||||  |||||||||||||| |||||||||||||||    
T  10537234 gatacaattttcgttagtgagaacttatgaattaacataaaaa 10537192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 41125752 - 41125805
Alignment:
Q  254 gatacaattttta-ttagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||    
T  41125752 gatacaaattttagttagtgagaacttatgaattaacataaaagcttatatatt 41125805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 43319095 - 43319132
Alignment:
Q  267 ttagtgagaacttacgaattaacataaaaacttattta 304  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  43319095 ttagtgagaacttatgaattaagataaaaacttattta 43319132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 2577435 - 2577383
Alignment:
Q  255 atacaattttta-ttagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||||||||||||| |||||||||||| || |||||||||    
T  2577435 atacaatttttcgttagtgagaacttatgaattaacataacaatttatttatt 2577383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 2878684 - 2878632
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||||||| |||||   ||||||||||||| ||||||||||    
T  2878684 gatacaatttttgttagtgaaaacttttaaattaacataaaagcttatttatt 2878632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 3977560 - 3977604
Alignment:
Q  262 ttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| ||||||||||| || |||||||||||||| ||||||||||    
T  3977560 ttttgttagtgagaacgtatgaattaacataaaagcttatttatt 3977604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 5559926 - 5559874
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||||||||| ||| ||||| |||||||| ||||||||||    
T  5559926 gatacaattttcgttagtgagaatttatgaatttacataaaagcttatttatt 5559874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 17657321 - 17657373
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||| |||||  |||||||||||||| ||||||||||||||  |||||||||    
T  17657321 gatacgattttcgttagtgagaacttatgaattaacataaaaggttatttatt 17657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 27805994 - 27806046
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||||||| ||||||  |||||||||||||  |||||||||    
T  27805994 gatacaatttttgttagtgaaaacttataaattaacataaaagtttatttatt 27806046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 40697085 - 40697137
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||  ||| |||||| |||||||||||||| ||||||||||    
T  40697085 gatacaatttttgttcctgaaaacttatgaattaacataaaagcttatttatt 40697137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 41534724 - 41534760
Alignment:
Q  267 ttagtgagaacttacgaattaacataaaaacttattt 303  Q
    ||||||||||| || ||||||||||||||||||||||    
T  41534724 ttagtgagaacatatgaattaacataaaaacttattt 41534760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 34707720 - 34707668
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  34707720 gatacaattttcgttagcgagaacttacgaattaacataaaaacttatttatt 34707668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 20685834 - 20685916
Alignment:
Q  220 aatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| |||||| ||||| |||     ||||||||||| ||||||||||||||  |||||| ||||||||||||||||||    
T  20685834 aatgtagtttatcaaaaaacaacttatgaa----gatacaattttcattagtgagaacttgtgaattatcataaaaacttatttatt 20685916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 1516105 - 1516053
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |||||||||||||||  |||||| |||||||||||||||||    
T  1516105 gatacaattttcattagtgagaacttataaattaaaataaaaacttatttatt 1516053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 42956186 - 42956134
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||||||||||  ||||||||||||||||||||||||    
T  42956186 gatacaattttcgttagtgagaacttataaattaacataaaaacttatttatt 42956134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 40581080 - 40581031
Alignment:
Q  257 acaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||||||||    
T  40581080 acaattttcgttagtgagaacttatgaattaacataaaatcttatttatt 40581031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 3870273 - 3870192
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaa 295  Q
    ||||||| |||| |||||||||||||||| ||| | ||    |||||||| |||| |||| |||||||||| ||||||||||||||    
T  3870273 taagcttgtcaaggtagtttatgaaaaaacaacatatg----atgatacacttttcattaatgagaacttatgaattaacataaaa 3870192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 29830646 - 29830594
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||||||||||  |||||| |||||||||||||||||    
T  29830646 gatacaattttcgttagtgagaacttataaattaaaataaaaacttatttatt 29830594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 37778212 - 37778264
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||||||||||||||  |||||| |||||| ||||||||||    
T  37778212 gatacaatttttgttagtgagaacttataaattaaaataaaagcttatttatt 37778264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 53787759 - 53787707
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| ||||||| ||| |||||||||| ||||||| |||||||||||||||||    
T  53787759 gatataatttttgttattgagaacttatgaattaagataaaaacttatttatt 53787707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 10449069 - 10449108
Alignment:
Q  267 ttagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  10449069 ttagtgagaacttatgaattaagataaaaacttatttatt 10449108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 22809240 - 22809148
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| ||||||||||||||||   || || || || |||||||||||  |||   |||||||| |||||||||||||||||||||||||    
T  22809240 taagcttgtcaaggtagtttatgaaaaaa---ctgcttatgaa-gatacaattttcgttaagaagaacttatgaattaacataaaaacttatttatt 22809148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 40240611 - 40240532
Alignment:
Q  223 gtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||||||| ||||| |||     |||||||||||  ||||||||| |||| ||||||| |||||| ||||||||||    
T  40240611 gtagtttatgaaaaaacaacttatgaa----gatacaattttcgttagtgagagcttatgaattaagataaaagcttatttatt 40240532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 52895410 - 52895360
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||  |||||||||| ||| |||||||||||||| ||||||||||    
T  52895410 tacaattttcgttagtgagaatttatgaattaacataaaagcttatttatt 52895360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7124702 - 7124650
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||| | ||||||||  ||||||||| ||||||||||||||    
T  7124702 gatacaatttttgttaataagaacttatcaattaacatcaaaacttatttatt 7124650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 29830765 - 29830717
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatt 302  Q
    |||||||||||| ||| ||||||||||  |||||| |||||||||||||    
T  29830765 gatacaatttttgttactgagaacttataaattaaaataaaaacttatt 29830717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 3069901 - 3069808
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttattg 307  Q
    ||||||| |||| |||||||||||||||| | ||| |||     ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||    
T  3069901 taagcttgtcaaggtagtttatgaaaaaacagcttatgaa----gatacaattttcactagtgagaacttatgaattaacataaaagcttatttattg 3069808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 48819338 - 48819430
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| |||||||||||||||| | ||| |||     |||||| ||||| |||||||||||||| |||||||||||||| ||||||||||    
T  48819338 taagcttgtcaaggtagtttatgaaaaaacagcttatgaa----gatacattttttgttagtgagaacttatgaattaacataaaagcttatttatt 48819430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 6337803 - 6337714
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttattt 303  Q
    ||||||| |||| |||||||||||||||| | ||| |||     |||||||||||| |||| ||||||||| |||||||||||||| |||||||    
T  6337803 taagcttgtcaaggtagtttatgaaaaaacagcttatgaa----gatacaatttttgttagcgagaacttatgaattaacataaaagcttattt 6337714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 22593414 - 22593362
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||||||||||||||  ||||||||||||| ||||||||||    
T  22593414 gatacaatttttgttagtgagaacttataaattaacataaaagcttatttatt 22593362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 28690083 - 28690135
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||||||||||||||| ||  |||||||||||||| ||||||||||    
T  28690083 gatacaatttttattagtgagaaattctgaattaacataaaagcttatttatt 28690135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 15515394 - 15515302
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| |||||||||||||||| | ||| |||     |||||||||||  |||||||||||||| |||||||||| ||| ||||||||||    
T  15515394 taagcttgtcaaggtagtttatgaaaaaagagcttatgaa----gatacaattttcgttagtgagaacttatgaattaacatgaaagcttatttatt 15515302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 41196757 - 41196665
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| ||||||||||||||||||||| | ||| |||     |||||||||||| ||||||||| |||  |||||||||||||  ||||||||||    
T  41196757 taagcttgtcaatgtagtttatgaaaaaacagcttatgaa----gatacaatttttgttagtgagagcttgtgaattaacataaaggcttatttatt 41196665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 14461048 - 14460996
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |||||||||||||||  |||||||||||||| || ||||||    
T  14461048 gatacaattttcattagtgagaacttataaattaacataaaaatttgtttatt 14460996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 16888973 - 16888921
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| ||||||||||| ||| || ||||||||||| ||||||||||    
T  16888973 gatacaattttcattagtgagaatttatgacttaacataaaagcttatttatt 16888921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 41003466 - 41003518
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| ||||||||||||||||||||||  |||||||||||||  |||||||||    
T  41003466 gatataatttttattagtgagaacttattaattaacataaaagtttatttatt 41003518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 41130073 - 41130125
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| |||||||  |||||| |||||||||||||| ||||||||||    
T  41130073 gatacaattttcattagtgcaaacttaagaattaacataaaatcttatttatt 41130125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 16708879 - 16708930
Alignment:
Q  255 atacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||| |||||| ||| |||| ||||||||||||||| |||||||||    
T  16708879 atacaattttcattagtaagatcttatgaattaacataaaaatttatttatt 16708930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 12871482 - 12871432
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttattta 304  Q
    ||||| ||||| |||| ||| |||||| |||||||||||||||||||||||    
T  12871482 gataccattttcattaatgaaaacttatgaattaacataaaaacttattta 12871432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 391254 - 391307
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaa-cttatttatt 306  Q
    |||||||||||  |||| ||||||||| ||||||||||||||| ||||||||||    
T  391254 gatacaattttcgttagcgagaacttatgaattaacataaaaagcttatttatt 391307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 9572784 - 9572739
Alignment:
Q  261 tttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  9572784 tttttgttagtgagaacttatgaattaatataaaagcttatttatt 9572739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 38781160 - 38781209
Alignment:
Q  257 acaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||  |||||||||||||| |||||||||||||| | ||||||||    
T  38781160 acaattttggttagtgagaacttatgaattaacataaaagcatatttatt 38781209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 1005419 - 1005471
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||||  ||||||||||||| |||||||||| ||| || |||||||    
T  1005419 gatacaatttttgatagtgagaacttatgaattaacatcaaagctcatttatt 1005471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 28870286 - 28870334
Alignment:
Q  258 caatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||  |||||||||||||| |||| ||||||||| ||||||||||    
T  28870286 caattttctttagtgagaacttatgaatgaacataaaagcttatttatt 28870334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 37329419 - 37329367
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  || |||||||||||  ||||||||||||| ||||||||||    
T  37329419 gatacaattttcgttggtgagaacttataaattaacataaaagcttatttatt 37329367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 51477825 - 51477773
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| ||| ||| ||| ||||||||||| |||||||||||| |||||||||||    
T  51477825 gatataatatttgttactgagaacttacaaattaacataaacacttatttatt 51477773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 24826 - 24878
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||| || |||||||||||||||  ||||||||||||||||||||||||    
T  24826 gatacaatattcattagtgagaacttataaattaacataaaaacttatttatt 24878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 32975726 - 32975818
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| |||||||||||||| | ||||| |||     |||||||||||| || ||||||||||| ||||||| |||||| ||||||||||    
T  32975726 taagcttgtcaaggtagtttatgaaaacacaacttatgaa----gatacaatttttgtttgtgagaacttatgaattaatataaaagcttatttatt 32975818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 14262378 - 14262454
Alignment:
Q  223 gtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttattt 303  Q
    |||||||||||||||| ||||| |||   || ||||||||||| ||||| ||| |||| ||||||||||||||||||||||    
T  14262378 gtagtttatgaaaaaacaacttatga---at-atacaatttttgttagtaagatcttatgaattaacataaaaacttattt 14262454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 10213777 - 10213826
Alignment:
Q  257 acaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||| |||||||||||||| ||||||||||| || ||||||||||    
T  10213777 acaatttttgttagtgagaacttatgaattaacatacaagcttatttatt 10213826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 8752885 - 8752937
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| || ||||||||||| |||||||||||||| ||||||||||    
T  8752885 gatacaaattttgtttgtgagaacttatgaattaacataaaagcttatttatt 8752937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 10298973 - 10298892
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaa 295  Q
    ||||||| |||| |||||||||||||||| | ||| |||     |||||||||||| ||| |||||||||| ||||||||||||||    
T  10298973 taagcttgtcaaggtagtttatgaaaaaacagcttatgaa----gatacaatttttgttaatgagaacttatgaattaacataaaa 10298892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 25333708 - 25333656
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||| |||||| |||||||||||||| ||||||||||    
T  25333708 gatacaattttcgttagtgaaaacttatgaattaacataaaagcttatttatt 25333656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 25465854 - 25465802
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| ||| ||| |||||| |||||||||||||| ||||||||||    
T  25465854 gatacaatttttgttactgaaaacttatgaattaacataaaagcttatttatt 25465802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 28280796 - 28280840
Alignment:
Q  262 ttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||    
T  28280796 ttttgttagtgagaacttatgaattaagataaaaacttatttatt 28280840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 32131519 - 32131571
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||| | ||||||||||||| |||||||||||||| ||||| ||||    
T  32131519 gatacaattttcaatagtgagaacttatgaattaacataaaagcttatctatt 32131571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 41145403 - 41145351
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||| ||||| ||||||||||||||| ||||||| ||| |||||||||||||    
T  41145403 gatacgattttcattagtgagaacttatgaattaatatataaacttatttatt 41145351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 16926722 - 16926683
Alignment:
Q  267 ttagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  16926722 ttagtgagaacttataaattaacataaaaacttatttatt 16926683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 24350566 - 24350474
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| |||| ||| |||||||||||||| ||| |||     |||| ||||||  ||||| |||||||| |||||||||||||| ||||||||||    
T  24350566 taagcttgtcaacgtaatttatgaaaaaatagcttatgaa----gatataattttcgttagtaagaacttatgaattaacataaaatcttatttatt 24350474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 38895698 - 38895790
Alignment:
Q  210 taagcttatcaatgtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||| | || ||||||||||||||||||| || |||     |||||||| ||| ||||||| ||||||  |||||| |||||||||||||||||    
T  38895698 taagcttgttaaggtagtttatgaaaaaataatttatgaa----gatacaatatttgttagtgaaaacttataaattaatataaaaacttatttatt 38895790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 2563410 - 2563478
Alignment:
Q  223 gtagtttatgaaaaaataacttctgatcaatgatacaatttttattagtgagaacttacgaattaacataaaa 295  Q
    |||||||||||||||| ||||| |||   || ||||||||||||||||| ||| |||| ||||||||||||||    
T  2563410 gtagtttatgaaaaaacaacttttga---at-atacaatttttattagtaagatcttatgaattaacataaaa 2563478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 32213019 - 32212970
Alignment:
Q  257 acaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||| |||||||||||||||  || |||||||||| ||||||||||    
T  32213019 acaattttcattagtgagaacttataaaataacataaaagcttatttatt 32212970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 19925636 - 19925688
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  ||||||||| ||||| |||||| ||||| |||||||||||    
T  19925636 gatacaattttcgttagtgagagcttacaaattaaaataaatacttatttatt 19925688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 34286571 - 34286519
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||  |||| ||||||||| ||||||| |||||| ||||||||||    
T  34286571 gatacaattttcgttagggagaacttatgaattaatataaaagcttatttatt 34286519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 35286007 - 35286059
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    ||||||||||||| ||| ||||||||| |||||||| | ||| ||||||||||    
T  35286007 gatacaatttttagtagcgagaacttatgaattaacgtgaaagcttatttatt 35286059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 42363324 - 42363272
Alignment:
Q  254 gatacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||||| |||||||||||||   |||||| |||||| ||||||||||    
T  42363324 gatacaatttttgttagtgagaacttttaaattaaaataaaagcttatttatt 42363272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 48633 - 48583
Alignment:
Q  256 tacaatttttattagtgagaacttacgaattaacataaaaacttatttatt 306  Q
    |||||||||| ||| || ||||||| |||||||||||||| ||||||||||    
T  48633 tacaatttttgttaatgggaacttatgaattaacataaaagcttatttatt 48583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 97218 - 97174
Alignment:
Q  252 atgatacaatttttattagtgagaacttacgaattaacataaaaa 296  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||    
T  97218 atgatacaattttcgttagtgagaacttatgaattaacattaaaa 97174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University