View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_16 (Length: 383)
Name: NF13427_low_16
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 13025720 - 13025359
Alignment:
| Q |
13 |
aaaatggctaacttacaaattttgaagacaaaactcaaagaagtcgaatcaatgcttgaagatggaataatacgtggtccacattcacatgaagacatag |
112 |
Q |
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| T |
13025720 |
aaaatggctaacttacaaattttgaagacaaaactcaaagaagtggaatcaatgcttgaagatggaataatacgtggtccacattcacatgaagacatag |
13025621 |
T |
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| Q |
113 |
aacaaaaacttgcattcatgacaaaccttgcagccactgaatttaaatcatctcacccatcatcaaatccacaacatatgcatcaaattttacaaaggtt |
212 |
Q |
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| T |
13025620 |
aacaaaaacttgcattcatgacaaaccttgcagccactgaatttaaatcatctaacccatcatcaaatccacaacatatgcatcaaattttacaaaggtt |
13025521 |
T |
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| Q |
213 |
agaatcagcaaggaattcttttaatgaaagggacaaggattctatatcacatttcacaacattttcgaatccggaattcgacaaggattctttatccaat |
312 |
Q |
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| T |
13025520 |
agaatcagcaaggaattcttttaatgaaagggacaaggattctatatcacatttcacaacattttcgaatccggagttcgacaaggattctttatccaat |
13025421 |
T |
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| Q |
313 |
tctaattctacaacttctttcaatgagtcttgtttgaatgatactggtgagacacttgatga |
374 |
Q |
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| T |
13025420 |
tctaattctacatcttctttcaatgagtcttgtttgaatgatgctggtgagacacttgatga |
13025359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 32 - 354
Target Start/End: Complemental strand, 5981401 - 5981082
Alignment:
| Q |
32 |
ttttgaagacaaaactcaaagaagtcgaatcaatgcttgaagatggaataatacgtggtccacattcacatgaagacatagaacaaaaacttgcattcat |
131 |
Q |
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| T |
5981401 |
ttttgaaagcaaaactcaaagaactcgaatcaattctcactgaaggaatactacgtgatccaaattcacaagaagaaatagaacaaaaatttgcattcat |
5981302 |
T |
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| Q |
132 |
gacaaaccttgcagccactgaatttaaatcatctcacccatcatcaaatccacaacatatgcatcaaattttacaaaggttagaatcagcaaggaattct |
231 |
Q |
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| T |
5981301 |
gtcaaaccttatacatgctgaatttgaatcatctgacccatcatcaaatccaca---tttgaaccaatgttaccaaaggttcaaatcattgaagaattct |
5981205 |
T |
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| Q |
232 |
tttaatgaaagggacaaggattctatatcacatttcacaacattttcgaatccggaattcgacaaggattctttatccaattctaattctacaacttctt |
331 |
Q |
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| T |
5981204 |
tttaatgatagagacaaggattctatttcacatttcacaacattttcgaatccggaattcgacaaagattctatatccaattctgattctacatcttctt |
5981105 |
T |
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| Q |
332 |
tcaatgagtcttgtttgaatgat |
354 |
Q |
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| T |
5981104 |
ttaatgagtcatgtttgaatgat |
5981082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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