View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_2 (Length: 641)
Name: NF13427_low_2
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 47254003 - 47254412
Alignment:
| Q |
18 |
ttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaaatttaaaaagtnnnnnnnnnnnn-ttgtcaattcaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47254003 |
ttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaaatttaaaaagtaaaaaaaaaaaaattgtcaattcaac |
47254102 |
T |
|
| Q |
117 |
agcaaactaacactaaaattacaaaaacataacacaatttttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47254103 |
agcaaactaacactaaaattacaaaaacataacacaatttttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctg |
47254202 |
T |
|
| Q |
217 |
ttgacagactcattagacagtaatctgtcaatgtatgaaactgcaagatgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaat |
316 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47254203 |
ttgacagactcattggacaggaatctgtcaatgtatgaaacagcaagatgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaat |
47254302 |
T |
|
| Q |
317 |
caaccagtatccctctcatattagcagtgacacctctttgaactttctcaatataaccaatcattggtcttctctttttctgaacctgagaaacaatcaa |
416 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47254303 |
caaccagtatccctctcatattagcagtaacacctctttgaactttctcaatataaccaatcattggtcttctctttttctgaacctgagaaacaatcaa |
47254402 |
T |
|
| Q |
417 |
accaataatt |
426 |
Q |
| |
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||||| |||| |
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| T |
47254403 |
accaaaaatt |
47254412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 478 - 629
Target Start/End: Original strand, 47254463 - 47254614
Alignment:
| Q |
478 |
ttacctccattgtgcgaagatagttggagatatcagatgcataaggctcaaaaatctcttcataatcagattttgcattgattttgctgaaatctggttt |
577 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47254463 |
ttacctccattgtgcgaagatagttggagatatcagatgcataagactcaaaaatctcttcataatcagattttgcattgattttgctgaaatctggttt |
47254562 |
T |
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| Q |
578 |
atcaaaattgaaaccataaaccaaacggacagcatcagatttctttggccta |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47254563 |
atcaaaattgaaaccataaaccaaacggacagcatcagatttctttggccta |
47254614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 157 - 397
Target Start/End: Original strand, 47242886 - 47243126
Alignment:
| Q |
157 |
ttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattagacagtaatctgtcaatgtatgaaa |
256 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| || | ||||| | ||||| ||||||||||||| |
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| T |
47242886 |
ttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaa |
47242985 |
T |
|
| Q |
257 |
ctgcaagatgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcatattagcagtgacacctctttg |
356 |
Q |
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| | ||||||||||||| || |||||| ||||||| || ||||||||||||||||||||||||| | | || ||||| || | || | |||||||| |
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| T |
47242986 |
cagagagatgaagggtttctggaagaagcgtgtattcatctgcaacctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcctctttg |
47243085 |
T |
|
| Q |
357 |
aactttctcaatataaccaatcattggtcttctctttttct |
397 |
Q |
| |
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||| ||||| |||||||||| |||||||||||||||||||| |
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| T |
47243086 |
aacattctccatataaccaaacattggtcttctctttttct |
47243126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 164 - 416
Target Start/End: Original strand, 47249722 - 47249974
Alignment:
| Q |
164 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattagacagtaatctgtcaatgtatgaaactgcaag |
263 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||| ||| |||| | |||||||||||||||||||||| || |
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| T |
47249722 |
cttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacag |
47249821 |
T |
|
| Q |
264 |
atgaagggtttgagggagaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcatattagcagtgacacctctttgaactttc |
363 |
Q |
| |
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|||||| || | || |||||||||||||| || ||||||||||| ||||||||||||| | |||| ||||| || | | | ||||| ||||| ||| |
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| T |
47249822 |
atgaagtgtctcgggaagaagcttgtattcatctgcaacctcaactaaccaatcaaccaatgtccccctcatgtttgatgaaatgcctctctgaacattc |
47249921 |
T |
|
| Q |
364 |
tcaatataaccaatcattggtcttctctttttctgaacctgagaaacaatcaa |
416 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||| | |||| ||||| |||| |
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|
| T |
47249922 |
tcaagataaccaaccattggtcttctctttttctgcatctgataaacattcaa |
47249974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 47249177 - 47249247
Alignment:
| Q |
18 |
ttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaaatttaaaa |
88 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
47249177 |
ttatcagtaatttggcagaaatccactgcctttggtggggtaatttcttcatactttctgcatatttaaaa |
47249247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 47242746 - 47242807
Alignment:
| Q |
18 |
ttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgca |
79 |
Q |
| |
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|||||||| || ||||||||||| | ||||||||||||| ||||||||||||||| ||||| |
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| T |
47242746 |
ttatcagtgatttggcagaaatctatggcctttggtggggtgatttcttcatacttcctgca |
47242807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 47250060 - 47250107
Alignment:
| Q |
478 |
ttacctccattgtgcgaagatagttggagatatcagatgcataaggct |
525 |
Q |
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|||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
47250060 |
ttacctccattgtgcgaagataatcagagatatcagatacataaggct |
47250107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 47266025 - 47265980
Alignment:
| Q |
164 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagctt |
209 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||||||||| |
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|
| T |
47266025 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
47265980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 5434680 - 5434645
Alignment:
| Q |
282 |
aagcttgtattcttcagcaacctcaaccaaccaatc |
317 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |
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| T |
5434680 |
aagcttgtattcttcagcaacttcaaccaaccaatc |
5434645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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