View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_20 (Length: 312)
Name: NF13427_low_20
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 17453624 - 17453499
Alignment:
| Q |
14 |
agagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacacttcagacattccactcgttcttcgttttttatggat |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17453624 |
agagcatactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacacttcagacattccactcgttcttcgttttttatggat |
17453525 |
T |
|
| Q |
114 |
ataaataatatatggtaatatcttct |
139 |
Q |
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|||||||||||||||||||||||||| |
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| T |
17453524 |
ataaataatatatggtaatatcttct |
17453499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 17448567 - 17448430
Alignment:
| Q |
133 |
atcttctaaaagaaaaagaaacagaaacgtatatggtggtataagtggagtttcatcgatggtatcaaagcaatgtatgatcgatatgaggaagaataaa |
232 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17448567 |
atcttctaaaagaaaaagaaacagaaatgtatatggtggtataagtggagtttcatcgatggtatcaaagcaatgtatgatcgatatgag---gaataaa |
17448471 |
T |
|
| Q |
233 |
tacaaggttgtaaagtttaaaggacaatccggtgcactaaa |
273 |
Q |
| |
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||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
17448470 |
tacaaggttgtaaagtttaaagggcaactcggtgaactaaa |
17448430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 17432734 - 17432628
Alignment:
| Q |
18 |
cacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacacttcagacattccactcgttcttcgttttttatggatataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
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| T |
17432734 |
cacactggagtaatgggacttttctacctattggtggcagaagaacttccataccaacacttcagacattccactagttcttcattttttatggat-taa |
17432636 |
T |
|
| Q |
118 |
ataatata |
125 |
Q |
| |
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|||||||| |
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| T |
17432635 |
ataatata |
17432628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 17432574 - 17432453
Alignment:
| Q |
157 |
aaacgtatatggtggtataagtggagtttcatcgatggtatcaaagcaatgtatgatcgatatgaggaagaataaatacaaggttgtaaagtttaaagga |
256 |
Q |
| |
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|||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17432574 |
aaacatatatggcggtataagtggagtttcattgatggtatcaaagcaatatatgatcgatatgag---gaataaatacaaggttgtaaagtttaaaggg |
17432478 |
T |
|
| Q |
257 |
caatccggtgcactaaagttcccgc |
281 |
Q |
| |
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||| |||||||||||||| |||||| |
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| T |
17432477 |
caacccggtgcactaaagctcccgc |
17432453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 38213311 - 38213202
Alignment:
| Q |
15 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacacttcagacattccactcgttcttcgttttttatggata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
38213311 |
gagcacactggagtaatgggacttttctacttattggtggcagaacaactcccataccaacacttcagacattctactcgttcttcattttttatggata |
38213212 |
T |
|
| Q |
115 |
taaataatat |
124 |
Q |
| |
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|||||||||| |
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|
| T |
38213211 |
taaataatat |
38213202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 38237215 - 38237105
Alignment:
| Q |
15 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacacttcagacattccactcgttcttcgttttttatggata |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
38237215 |
gagcacaccggagtaatgggacttttctacctattggtggcagaacagctcccataccaacacttcagacattctactcgttcttcattttttatggata |
38237116 |
T |
|
| Q |
115 |
taaataatata |
125 |
Q |
| |
|
||||||||||| |
|
|
| T |
38237115 |
taaataatata |
38237105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 38225796 - 38225687
Alignment:
| Q |
15 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacacttcagacattccactcgttcttcgttttttatggata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
38225796 |
gagcacactggagtaatgggacttttctacttgttggtggcagaacagctcccagatcaacacttcagacattctactcgttcttcattttttatggata |
38225697 |
T |
|
| Q |
115 |
taaataatat |
124 |
Q |
| |
|
|||||||||| |
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|
| T |
38225696 |
taaataatat |
38225687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 38219706 - 38219611
Alignment:
| Q |
18 |
cacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacacttcagacattccactcgttcttcgttttttatggat |
113 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| |||||||||||| |
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| T |
38219706 |
cacaatggtgtaatgggacttttctacctattggtggcagaacaactcccagatcaacacttcagacattctacccgttcttcattttttatggat |
38219611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 38247677 - 38247616
Alignment:
| Q |
15 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38247677 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
38247616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 38252708 - 38252647
Alignment:
| Q |
15 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
76 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
38252708 |
gagcacaccggagtaatggggcttttctacatattggtggcagaacagctcccatatcaaca |
38252647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 38242412 - 38242369
Alignment:
| Q |
18 |
cacactggagtaatgggacttttctacctattggtggcagaaca |
61 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
38242412 |
cacactggtgtaatgggatttttctacctattggtggcagaaca |
38242369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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