View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13427_low_22 (Length: 305)
Name: NF13427_low_22
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_22 |
 | |
|
| [»] scaffold0391 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 33952040 - 33952314
Alignment:
| Q |
13 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacgctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33952040 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttctaacatatgagcgttatctattatgtagcattgacacgctt |
33952139 |
T |
|
| Q |
113 |
cagattgatgtcaaatagaaagacgcctaagttataatcatttgattactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952140 |
cagattgatgtcaaatagaaagaagcctaagttataatcatttgattactgaccaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
33952239 |
T |
|
| Q |
213 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaag |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952240 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaag |
33952314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 33974641 - 33974908
Alignment:
| Q |
13 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacgctt |
112 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33974641 |
aaaacagttcagatattatcgacaaaaatcttgtagaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacactt |
33974740 |
T |
|
| Q |
113 |
cagattgatgtcaaatagaaagacgcctaagttataatcatttgattactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
212 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
33974741 |
cagattgaagtcacatagaaagacgcct-agttataatcatttgattactgaccatactcgcttgcaatgaattgcaggtcgttagaagttgcaatggtt |
33974839 |
T |
|
| Q |
213 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatag |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
33974840 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcatgacttgtggcataagatag |
33974908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 33991560 - 33991828
Alignment:
| Q |
13 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacgctt |
112 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33991560 |
aaaatagttcagatattatcgacaaaaatcttgtcgaaaaggtacttgttcttactttcttgcatatgagcgttatctattatgtagcatcgacacactt |
33991659 |
T |
|
| Q |
113 |
cagattgatgtcaaatagaaagacgcctaagttataatcatttgattactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
212 |
Q |
| |
|
|||||||| |||| ||||||||| ||||| |||| ||||||||||||| |||| | |||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33991660 |
cagattgaagtcacatagaaagatgcctatgttaaaatcatttgattattgaccatatttacttgcaatgaattgcaggtcgttagaagttgcaaaggtt |
33991759 |
T |
|
| Q |
213 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatag |
281 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||| ||||||| |
|
|
| T |
33991760 |
taccgcttaccattaaagtgattgctacatcactcagaaatcggcccgatgacttgtggcgtaagatag |
33991828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 33959576 - 33959614
Alignment:
| Q |
249 |
aaaatcggcctcgtgacatgtggcgaaagatagggaaag |
287 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33959576 |
aaaatcggcctcgtgacttgtggcgaaagatagggaaag |
33959614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 11776 - 11899
Alignment:
| Q |
158 |
ttactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtttaccgcttaccattaaagtaattgctacatcactcaaaaatcggc |
257 |
Q |
| |
|
|||||||| | ||||||||||| | || |||||||||| |||||||| |||||||||||||||| ||| |||| |||||||||||||||| |||||| | |
|
|
| T |
11776 |
ttactgaccatatttgcttgcactcaaatgcaggttgtaagaagttgcaaaggtttaccgcttacgattgaagtgattgctacatcactcagaaatcgac |
11875 |
T |
|
| Q |
258 |
ctcgtgacatgtggcgaaagatag |
281 |
Q |
| |
|
|| |||| ||||| |||||||| |
|
|
| T |
11876 |
cttatgacttgtggacaaagatag |
11899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 11704 - 11752
Alignment:
| Q |
19 |
gttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttac |
67 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11704 |
gttcagatactatcaacaaagatcttgtggaaaaggtacttgttcttac |
11752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University