View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_27 (Length: 269)
Name: NF13427_low_27
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_27 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 38261798 - 38262039
Alignment:
| Q |
13 |
aatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38261798 |
aatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgt |
38261897 |
T |
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| Q |
113 |
ctttgcaagtagaccacctcatttggcagcaaaaataatctcttgggaccagaggaacttgagttttggtgaatatggttcttattggcgaaatatgaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38261898 |
ctttgcaagtagaccacctcatttggcagcaaaaataatctcttgggaccagaggaacttgagttttggtgaatatggttcttattggcgaaatatgaga |
38261997 |
T |
|
| Q |
213 |
aaaatgtgcactttagaattgttgagccatgcaaaaataaat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
38261998 |
aaaatgtgcactttagaattgttgagccatgcaaaaataaat |
38262039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 38258041 - 38258283
Alignment:
| Q |
13 |
aatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgt |
112 |
Q |
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||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38258041 |
aatatggaccaattatgcacttacgtttaggtttagtaccaatcatagttgtttcttcacctcaagcagctgaacttttcctcaagactcatgatcttgt |
38258140 |
T |
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| Q |
113 |
ctttgcaagtagaccacctcatttggcagc-aaaaataatctcttgggaccagaggaacttgagttttggtgaatatggttcttattggcgaaatatgag |
211 |
Q |
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||||||||| |||||||| | |||||| |||||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38258141 |
ctttgcaagcagaccaccaattgaggcagcaaaaaatcatcggttgggatcggaggaacttgagttttggtgaatatggttcttattggcgaaacatgag |
38258240 |
T |
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| Q |
212 |
aaaaatgtgcactttagaattgttgagccatgcaaaaataaat |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38258241 |
aaaaatgtgcactttagaattgttgagccatgcaaaaataaat |
38258283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 4631 - 4868
Alignment:
| Q |
13 |
aatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgt |
112 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| | |
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| T |
4631 |
aatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatcttct |
4730 |
T |
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| Q |
113 |
ctttgcaagtagaccacctcatttggcagcaaaaataatctcttgggaccagaggaacttgagttttggtgaatatggttcttattggcgaaatatgaga |
212 |
Q |
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|||||| |||||||||||| | ||||| |||| | || | || | |||| | ||||||| ||| ||| ||||||||||||||||| ||| |
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| T |
4731 |
ctttgctagtagaccaccttctgaggcaggaaaactcatgttttataatcagaaagatgtgagtttcagtgtatacggttcttattggcgaaacatgcac |
4830 |
T |
|
| Q |
213 |
aaaatgtgcactttagaattgttgagccatgcaaaaat |
250 |
Q |
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|| |||||||| |||||||||||||||||| ||||||| |
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| T |
4831 |
aagatgtgcacgttagaattgttgagccattcaaaaat |
4868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 27411832 - 27412069
Alignment:
| Q |
13 |
aatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgt |
112 |
Q |
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||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||| |||| |
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| T |
27411832 |
aatatggaccaataatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactcttcctcaagactcatgatattgt |
27411931 |
T |
|
| Q |
113 |
ctttgcaagtagaccacctcatttggcagcaaaaataatctcttgggaccagaggaacttgagttttggtgaatatggttcttattggcgaaatatgaga |
212 |
Q |
| |
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||||||||||||||||||| | ||||||| || | || | || | |||| | | |||| || ||| ||| ||||| ||||||||||| ||| | |
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| T |
27411932 |
ctttgcaagtagaccacctattgaggcagcacaactcatgttttacaatcagaaggatgtgagcttcagtgtatacggttcgtattggcgaaacatgcgc |
27412031 |
T |
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| Q |
213 |
aaaatgtgcactttagaattgttgagccatgcaaaaat |
250 |
Q |
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|| |||||||| |||||||||||||||||| ||||||| |
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| T |
27412032 |
aagatgtgcacattagaattgttgagccatacaaaaat |
27412069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 8850 - 8732
Alignment:
| Q |
13 |
aatatggaccaatcatgcacttacgcttaggtttaataccaaccatagttgtttcatcacctcaagcagctgaacttttcctcaaaactcatgatcttgt |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||| |||| |
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| T |
8850 |
aatatggaccaatcatgcacttgcgcttaggtttagtaccaaccatagttgtttcttcacctcaagctgctgaactctttctcaagactcatgattttgt |
8751 |
T |
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| Q |
113 |
ctttgcaagtagaccacct |
131 |
Q |
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||||||||||||||||||| |
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| T |
8750 |
ctttgcaagtagaccacct |
8732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 8674 - 8613
Alignment:
| Q |
189 |
ggttcttattggcgaaatatgagaaaaatgtgcactttagaattgttgagccatgcaaaaat |
250 |
Q |
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||||| ||||||||||| ||| | || |||||||| |||||||||||||||||| ||||||| |
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| T |
8674 |
ggttcatattggcgaaacatgcgcaagatgtgcacattagaattgttgagccattcaaaaat |
8613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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