View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_29 (Length: 251)
Name: NF13427_low_29
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24727553 - 24727779
Alignment:
| Q |
1 |
tttgttaccgtttctatctctttctatgatttgaatttataatgtttcacatttttgttgaataatgagaaaaagtggaaacagaatataattgaataat |
100 |
Q |
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| T |
24727553 |
tttgttaccgtttctatctctttctatgatttgaatttataatgtttcacatttttgttgaataatgagaaaaggtggaaacagaatataattgaataat |
24727652 |
T |
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| Q |
101 |
a---nnnnnnnnaaagaatcaagtaaaatacattttgatgtgtgtgtttaaataatagtgtgtcctaatacatgtgttcaagtaagactatctccaacac |
197 |
Q |
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| T |
24727653 |
atttttttttttaaagaatcaagtaaaatacattttgatgtgtgtgttta---aatagtgtgtccaaatacattttttcaagtaagactatctccaacac |
24727749 |
T |
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| Q |
198 |
ttataaagtggtaggtccaagaatttttcc |
227 |
Q |
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| T |
24727750 |
ttataaagtggtgggtcaaagaatttttcc |
24727779 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 32367355 - 32367288
Alignment:
| Q |
118 |
aagtaaaatacattttgatgtgtgtgtttaaataatagtgtgtcctaatacatgtgttcaagtaagactat |
188 |
Q |
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| T |
32367355 |
aagtaaaatacattttgatgtgtgtgttta---aacagtgtgtccaaatacatgtgcttaagtaagactat |
32367288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 14179291 - 14179332
Alignment:
| Q |
110 |
aaagaatcaagtaaaatacattttgatgtgtgtgtttaaata |
151 |
Q |
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| T |
14179291 |
aaagaattaagtaaaatacattttgatgtgtgtgtttaaata |
14179332 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 20731808 - 20731711
Alignment:
| Q |
61 |
aataatgagaaaaagtggaaacagaatataattgaataatannnnnnnn--aaagaatcaagtaaaatacattttgatgtgt--gtgtttaaataata |
154 |
Q |
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| T |
20731808 |
aataatgagaaaaagtggaaagagaaaatagttgaataatatttattttttaaagaattaagtaaaatacattttgatgtgtgtgtgtttaaataata |
20731711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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