View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13427_low_3 (Length: 611)
Name: NF13427_low_3
Description: NF13427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13427_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Complemental strand, 27066378 - 27065778
Alignment:
| Q |
1 |
cgtaagctatagcaagaatttgaacaaacctgagaatactttcaagaactatggtaaaggaagttttgctgctcaagagaaattcaccaattacagagat |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066378 |
cgtaagctatagtaagaatttgaacaaacctgagaatactttcaagaactatggtaaaggaagttttgctgctcaagagaaattcaccaattacagagat |
27066279 |
T |
|
| Q |
101 |
ggagctggttctggtgatgattctttcacttcgtatggtgagaattcgcagcgcggggtcaaggtggatttcaataactacggtcttaatccaggttatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
27066278 |
ggagctggttctggtgatgattctttcacttcgtatggtgagaattcgcagcgcggggtcaaggtggatttcaataactacggtcaaaatccagattatc |
27066179 |
T |
|
| Q |
201 |
caaaatctccaggaagtgaaactttcaaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066178 |
caaaatctccaggaagtgaaactttcaaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatt |
27066079 |
T |
|
| Q |
301 |
taaggattatgacaagaaaggtatttcttttgctagttataataaaactactgcttcaactaactctcttagtgatagtggtagtttggcaaaaaacatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27066078 |
taaggattatgacaagaaaggtatttcttttgctagttataataaaactactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatg |
27065979 |
T |
|
| Q |
401 |
gttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgc |
500 |
Q |
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| T |
27065978 |
gttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgc |
27065879 |
T |
|
| Q |
501 |
ctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgat |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| |
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| T |
27065878 |
ctcgttccattttgaccaaattgccatttgcatcttctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgat |
27065779 |
T |
|
| Q |
601 |
g |
601 |
Q |
| |
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| |
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| T |
27065778 |
g |
27065778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 289 - 589
Target Start/End: Complemental strand, 27079810 - 27079507
Alignment:
| Q |
289 |
taataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaa---ctactgcttcaactaactctcttagtgatagtggtagt |
385 |
Q |
| |
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|||||| || ||||||||||| || || |||||||||||||||||| |||||| ||| | || || ||||||| || ||| ||||||| |||| |||| |
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| T |
27079810 |
taataacacgtttaaggattacgataaaaaaggtatttcttttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagt |
27079711 |
T |
|
| Q |
386 |
ttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgc |
485 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||| | |||||||||||||| |
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| T |
27079710 |
ttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgc |
27079611 |
T |
|
| Q |
486 |
caaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttc |
585 |
Q |
| |
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||||||||||||| || ||| |||||||||||||||| || |||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||| || |
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| T |
27079610 |
caaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttgaagcaagtttttaaggtgtctgagaattcctc |
27079511 |
T |
|
| Q |
586 |
gatg |
589 |
Q |
| |
|
|||| |
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|
| T |
27079510 |
gatg |
27079507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 399 - 582
Target Start/End: Complemental strand, 27053538 - 27053355
Alignment:
| Q |
399 |
tggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
498 |
Q |
| |
|
||||| |||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
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| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
|
| Q |
499 |
gcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattc |
582 |
Q |
| |
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||| ||||||||||||| ||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||||| || ||||| |
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| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattc |
27053355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 498
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
377 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggata |
476 |
Q |
| |
|
||||||||||||| |||||| |||| | |||||||||||||| | |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
|
| Q |
477 |
aattaccgccaaggtcgttttt |
498 |
Q |
| |
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||||||| |||||||||||| |
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| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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